Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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A |
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G |
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A |
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A |
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A |
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C |
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A |
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G |
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C |
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T |
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C |
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T |
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G |
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C |
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G |
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C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
C |
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G |
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T |
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C |
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T |
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T |
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T |
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G |
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T |
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C |
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G |
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A |
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G |
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A |
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C |
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G |
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C |
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G |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.078 | 0.508 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.990 | 0.485 |
| Mean | Stdev |
1_O6-36_H41-1 | 2.162 | 1.020 |
| Mean | Stdev |
10_H1-27_N3-10 | 1.969 | 0.093 |
| Mean | Stdev |
10_H21-27_O2-10 | 1.903 | 0.127 |
| Mean | Stdev |
10_O6-27_H41-10 | 1.984 | 0.170 |
| Mean | Stdev |
11_H41-26_O6-11 | 1.963 | 0.155 |
| Mean | Stdev |
11_N3-26_H1-11 | 1.957 | 0.090 |
| Mean | Stdev |
11_O2-26_H21-11 | 1.900 | 0.126 |
| Mean | Stdev |
12_H3-25_N1-12 | 1.970 | 0.121 |
| Mean | Stdev |
12_O4-25_H61-12 | 1.988 | 0.195 |
| Mean | Stdev |
13_H41-24_O6-13 | 1.984 | 0.172 |
| Mean | Stdev |
13_N3-24_H1-13 | 1.974 | 0.098 |
| Mean | Stdev |
13_O2-24_H21-13 | 1.918 | 0.136 |
| Mean | Stdev |
14_H3-23_N1-14 | 1.969 | 0.120 |
| Mean | Stdev |
14_O4-23_H61-14 | 2.009 | 0.198 |
| Mean | Stdev |
15_H1-22_N3-15 | 1.972 | 0.094 |
| Mean | Stdev |
15_H21-22_O2-15 | 1.899 | 0.125 |
| Mean | Stdev |
15_O6-22_H41-15 | 1.950 | 0.152 |
| Mean | Stdev |
16_H41-21_O6-16 | 1.946 | 0.145 |
| Mean | Stdev |
16_N3-21_H1-16 | 1.966 | 0.090 |
| Mean | Stdev |
16_O2-21_H21-16 | 1.901 | 0.125 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.966 | 0.090 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.889 | 0.122 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.953 | 0.151 |
| Mean | Stdev |
18_H41-19_O6-18 | 1.981 | 0.220 |
| Mean | Stdev |
18_N3-19_H1-18 | 2.002 | 0.122 |
| Mean | Stdev |
18_O2-19_H21-18 | 1.927 | 0.155 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.958 | 0.154 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.974 | 0.095 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.896 | 0.125 |
| Mean | Stdev |
3_H61-34_O4-3 | 1.994 | 0.185 |
| Mean | Stdev |
3_N1-34_H3-3 | 1.960 | 0.113 |
| Mean | Stdev |
4_H1-33_N3-4 | 1.972 | 0.096 |
| Mean | Stdev |
4_H21-33_O2-4 | 1.915 | 0.136 |
| Mean | Stdev |
4_O6-33_H41-4 | 1.977 | 0.166 |
| Mean | Stdev |
5_H61-32_O4-5 | 1.992 | 0.186 |
| Mean | Stdev |
5_N1-32_H3-5 | 1.992 | 0.131 |
| Mean | Stdev |
6_H61-31_O4-6 | 1.988 | 0.174 |
| Mean | Stdev |
6_N1-31_H3-6 | 1.967 | 0.119 |
| Mean | Stdev |
7_H61-30_O4-7 | 1.981 | 0.174 |
| Mean | Stdev |
7_N1-30_H3-7 | 1.985 | 0.126 |
| Mean | Stdev |
8_H41-29_O6-8 | 2.002 | 0.189 |
| Mean | Stdev |
8_N3-29_H1-8 | 1.986 | 0.107 |
| Mean | Stdev |
8_O2-29_H21-8 | 1.887 | 0.120 |
| Mean | Stdev |
9_H61-28_O4-9 | 2.012 | 0.203 |
| Mean | Stdev |
9_N1-28_H3-9 | 1.954 | 0.110 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 2.1622 | 1.0200 |
1 | H1-N3_1-36 | 2.0777 | 0.5085 |
1 | H21-O2_1-36 | 1.9895 | 0.4854 |
2 | H41-O6_2-35 | 1.9583 | 0.1545 |
2 | N3-H1_2-35 | 1.9744 | 0.0947 |
2 | O2-H21_2-35 | 1.8958 | 0.1246 |
3 | N1-H3_3-34 | 1.9602 | 0.1131 |
3 | H61-O4_3-34 | 1.9944 | 0.1847 |
4 | O6-H41_4-33 | 1.9768 | 0.1664 |
4 | H1-N3_4-33 | 1.9724 | 0.0956 |
4 | H21-O2_4-33 | 1.9155 | 0.1356 |
5 | N1-H3_5-32 | 1.9916 | 0.1307 |
5 | H61-O4_5-32 | 1.9920 | 0.1860 |
6 | N1-H3_6-31 | 1.9673 | 0.1188 |
6 | H61-O4_6-31 | 1.9882 | 0.1737 |
7 | N1-H3_7-30 | 1.9850 | 0.1261 |
7 | H61-O4_7-30 | 1.9809 | 0.1737 |
8 | H41-O6_8-29 | 2.0024 | 0.1890 |
8 | N3-H1_8-29 | 1.9857 | 0.1066 |
8 | O2-H21_8-29 | 1.8873 | 0.1205 |
9 | N1-H3_9-28 | 1.9541 | 0.1104 |
9 | H61-O4_9-28 | 2.0122 | 0.2027 |
10 | O6-H41_10-27 | 1.9843 | 0.1699 |
10 | H1-N3_10-27 | 1.9691 | 0.0933 |
10 | H21-O2_10-27 | 1.9033 | 0.1266 |
11 | H41-O6_11-26 | 1.9632 | 0.1555 |
11 | N3-H1_11-26 | 1.9574 | 0.0903 |
11 | O2-H21_11-26 | 1.9003 | 0.1259 |
12 | H3-N1_12-25 | 1.9705 | 0.1206 |
12 | O4-H61_12-25 | 1.9877 | 0.1946 |
13 | H41-O6_13-24 | 1.9838 | 0.1723 |
13 | N3-H1_13-24 | 1.9737 | 0.0983 |
13 | O2-H21_13-24 | 1.9178 | 0.1356 |
14 | H3-N1_14-23 | 1.9694 | 0.1204 |
14 | O4-H61_14-23 | 2.0094 | 0.1975 |
15 | O6-H41_15-22 | 1.9498 | 0.1523 |
15 | H1-N3_15-22 | 1.9716 | 0.0937 |
15 | H21-O2_15-22 | 1.8994 | 0.1247 |
16 | H41-O6_16-21 | 1.9455 | 0.1449 |
16 | N3-H1_16-21 | 1.9665 | 0.0902 |
16 | O2-H21_16-21 | 1.9008 | 0.1247 |
17 | O6-H41_17-20 | 1.9530 | 0.1512 |
17 | H1-N3_17-20 | 1.9657 | 0.0905 |
17 | H21-O2_17-20 | 1.8885 | 0.1219 |
18 | H41-O6_18-19 | 1.9811 | 0.2197 |
18 | N3-H1_18-19 | 2.0024 | 0.1216 |
18 | O2-H21_18-19 | 1.9275 | 0.1546 |