Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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A |
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G |
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G |
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C |
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G |
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C |
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A |
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A |
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G |
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A |
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C |
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T |
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G |
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A |
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G |
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C |
3' |
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x |
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x |
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3' |
C |
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G |
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T |
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C |
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C |
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G |
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C |
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G |
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T |
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T |
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C |
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T |
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G |
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A |
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T |
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C |
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G |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.072 | 0.789 |
| Mean | Stdev |
1_H21-36_O2-1 | 2.008 | 0.903 |
| Mean | Stdev |
1_O6-36_H41-1 | 2.066 | 0.871 |
| Mean | Stdev |
10_H61-27_O4-10 | 1.996 | 0.181 |
| Mean | Stdev |
10_N1-27_H3-10 | 1.971 | 0.120 |
| Mean | Stdev |
11_H1-26_N3-11 | 1.956 | 0.090 |
| Mean | Stdev |
11_H21-26_O2-11 | 1.909 | 0.132 |
| Mean | Stdev |
11_O6-26_H41-11 | 1.971 | 0.159 |
| Mean | Stdev |
12_H61-25_O4-12 | 1.993 | 0.190 |
| Mean | Stdev |
12_N1-25_H3-12 | 1.977 | 0.120 |
| Mean | Stdev |
13_H41-24_O6-13 | 2.014 | 0.187 |
| Mean | Stdev |
13_N3-24_H1-13 | 1.974 | 0.099 |
| Mean | Stdev |
13_O2-24_H21-13 | 1.902 | 0.127 |
| Mean | Stdev |
14_H3-23_N1-14 | 1.958 | 0.120 |
| Mean | Stdev |
14_O4-23_H61-14 | 2.026 | 0.216 |
| Mean | Stdev |
15_H1-22_N3-15 | 1.973 | 0.094 |
| Mean | Stdev |
15_H21-22_O2-15 | 1.893 | 0.125 |
| Mean | Stdev |
15_O6-22_H41-15 | 1.966 | 0.158 |
| Mean | Stdev |
16_H61-21_O4-16 | 1.973 | 0.181 |
| Mean | Stdev |
16_N1-21_H3-16 | 1.987 | 0.125 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.963 | 0.093 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.897 | 0.127 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.967 | 0.156 |
| Mean | Stdev |
18_H41-19_O6-18 | 2.013 | 0.335 |
| Mean | Stdev |
18_N3-19_H1-18 | 2.002 | 0.164 |
| Mean | Stdev |
18_O2-19_H21-18 | 1.922 | 0.185 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.957 | 0.150 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.973 | 0.093 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.895 | 0.122 |
| Mean | Stdev |
3_H61-34_O4-3 | 2.009 | 0.196 |
| Mean | Stdev |
3_N1-34_H3-3 | 1.959 | 0.115 |
| Mean | Stdev |
4_H1-33_N3-4 | 1.957 | 0.089 |
| Mean | Stdev |
4_H21-33_O2-4 | 1.894 | 0.123 |
| Mean | Stdev |
4_O6-33_H41-4 | 1.982 | 0.171 |
| Mean | Stdev |
5_H1-32_N3-5 | 1.960 | 0.090 |
| Mean | Stdev |
5_H21-32_O2-5 | 1.908 | 0.126 |
| Mean | Stdev |
5_O6-32_H41-5 | 1.945 | 0.151 |
| Mean | Stdev |
6_H41-31_O6-6 | 1.966 | 0.160 |
| Mean | Stdev |
6_N3-31_H1-6 | 1.965 | 0.092 |
| Mean | Stdev |
6_O2-31_H21-6 | 1.886 | 0.119 |
| Mean | Stdev |
7_H1-30_N3-7 | 1.970 | 0.093 |
| Mean | Stdev |
7_H21-30_O2-7 | 1.909 | 0.131 |
| Mean | Stdev |
7_O6-30_H41-7 | 1.946 | 0.148 |
| Mean | Stdev |
8_H41-29_O6-8 | 1.954 | 0.151 |
| Mean | Stdev |
8_N3-29_H1-8 | 1.978 | 0.096 |
| Mean | Stdev |
8_O2-29_H21-8 | 1.908 | 0.128 |
| Mean | Stdev |
9_H61-28_O4-9 | 1.998 | 0.183 |
| Mean | Stdev |
9_N1-28_H3-9 | 1.959 | 0.111 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 2.0657 | 0.8706 |
1 | H1-N3_1-36 | 2.0720 | 0.7894 |
1 | H21-O2_1-36 | 2.0082 | 0.9026 |
2 | H41-O6_2-35 | 1.9567 | 0.1503 |
2 | N3-H1_2-35 | 1.9734 | 0.0933 |
2 | O2-H21_2-35 | 1.8955 | 0.1216 |
3 | N1-H3_3-34 | 1.9594 | 0.1147 |
3 | H61-O4_3-34 | 2.0091 | 0.1961 |
4 | O6-H41_4-33 | 1.9825 | 0.1709 |
4 | H1-N3_4-33 | 1.9571 | 0.0895 |
4 | H21-O2_4-33 | 1.8936 | 0.1233 |
5 | O6-H41_5-32 | 1.9446 | 0.1508 |
5 | H1-N3_5-32 | 1.9601 | 0.0902 |
5 | H21-O2_5-32 | 1.9077 | 0.1257 |
6 | H41-O6_6-31 | 1.9660 | 0.1595 |
6 | N3-H1_6-31 | 1.9650 | 0.0916 |
6 | O2-H21_6-31 | 1.8862 | 0.1190 |
7 | O6-H41_7-30 | 1.9458 | 0.1479 |
7 | H1-N3_7-30 | 1.9700 | 0.0928 |
7 | H21-O2_7-30 | 1.9089 | 0.1308 |
8 | H41-O6_8-29 | 1.9543 | 0.1509 |
8 | N3-H1_8-29 | 1.9778 | 0.0961 |
8 | O2-H21_8-29 | 1.9078 | 0.1280 |
9 | N1-H3_9-28 | 1.9587 | 0.1110 |
9 | H61-O4_9-28 | 1.9977 | 0.1835 |
10 | N1-H3_10-27 | 1.9711 | 0.1196 |
10 | H61-O4_10-27 | 1.9960 | 0.1813 |
11 | O6-H41_11-26 | 1.9710 | 0.1586 |
11 | H1-N3_11-26 | 1.9556 | 0.0905 |
11 | H21-O2_11-26 | 1.9086 | 0.1318 |
12 | N1-H3_12-25 | 1.9769 | 0.1205 |
12 | H61-O4_12-25 | 1.9933 | 0.1897 |
13 | H41-O6_13-24 | 2.0138 | 0.1873 |
13 | N3-H1_13-24 | 1.9740 | 0.0993 |
13 | O2-H21_13-24 | 1.9018 | 0.1265 |
14 | H3-N1_14-23 | 1.9575 | 0.1198 |
14 | O4-H61_14-23 | 2.0262 | 0.2165 |
15 | O6-H41_15-22 | 1.9658 | 0.1579 |
15 | H1-N3_15-22 | 1.9728 | 0.0936 |
15 | H21-O2_15-22 | 1.8932 | 0.1254 |
16 | N1-H3_16-21 | 1.9870 | 0.1248 |
16 | H61-O4_16-21 | 1.9728 | 0.1807 |
17 | O6-H41_17-20 | 1.9670 | 0.1561 |
17 | H1-N3_17-20 | 1.9632 | 0.0934 |
17 | H21-O2_17-20 | 1.8974 | 0.1267 |
18 | H41-O6_18-19 | 2.0130 | 0.3347 |
18 | N3-H1_18-19 | 2.0025 | 0.1640 |
18 | O2-H21_18-19 | 1.9223 | 0.1847 |