Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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G |
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A |
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C |
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C |
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G |
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A |
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A |
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T |
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G |
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T |
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A |
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A |
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T |
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T |
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G |
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C |
3' |
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x |
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x |
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x |
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x |
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x |
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3' |
C |
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G |
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C |
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T |
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G |
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G |
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C |
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T |
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T |
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A |
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C |
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A |
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T |
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T |
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A |
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A |
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C |
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G |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.001 | 0.114 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.927 | 0.149 |
| Mean | Stdev |
1_O6-36_H41-1 | 1.981 | 0.205 |
| Mean | Stdev |
10_H3-27_N1-10 | 1.982 | 0.122 |
| Mean | Stdev |
10_O4-27_H61-10 | 2.001 | 0.182 |
| Mean | Stdev |
11_H1-26_N3-11 | 1.988 | 0.105 |
| Mean | Stdev |
11_H21-26_O2-11 | 1.878 | 0.117 |
| Mean | Stdev |
11_O6-26_H41-11 | 1.987 | 0.188 |
| Mean | Stdev |
12_H3-25_N1-12 | 1.998 | 0.136 |
| Mean | Stdev |
12_O4-25_H61-12 | 1.975 | 0.179 |
| Mean | Stdev |
13_H61-24_O4-13 | 2.049 | 0.222 |
| Mean | Stdev |
13_N1-24_H3-13 | 1.954 | 0.111 |
| Mean | Stdev |
14_H61-23_O4-14 | 2.014 | 0.192 |
| Mean | Stdev |
14_N1-23_H3-14 | 1.992 | 0.123 |
| Mean | Stdev |
15_H3-22_N1-15 | 1.988 | 0.123 |
| Mean | Stdev |
15_O4-22_H61-15 | 2.000 | 0.179 |
| Mean | Stdev |
16_H3-21_N1-16 | 1.960 | 0.115 |
| Mean | Stdev |
16_O4-21_H61-16 | 1.992 | 0.175 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.976 | 0.099 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.899 | 0.127 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.958 | 0.164 |
| Mean | Stdev |
18_H41-19_O6-18 | 1.991 | 0.286 |
| Mean | Stdev |
18_N3-19_H1-18 | 2.004 | 0.135 |
| Mean | Stdev |
18_O2-19_H21-18 | 1.935 | 0.179 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.949 | 0.146 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.974 | 0.091 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.908 | 0.130 |
| Mean | Stdev |
3_H1-34_N3-3 | 1.959 | 0.088 |
| Mean | Stdev |
3_H21-34_O2-3 | 1.878 | 0.119 |
| Mean | Stdev |
3_O6-34_H41-3 | 1.962 | 0.155 |
| Mean | Stdev |
4_H61-33_O4-4 | 1.948 | 0.154 |
| Mean | Stdev |
4_N1-33_H3-4 | 1.993 | 0.129 |
| Mean | Stdev |
5_H41-32_O6-5 | 1.975 | 0.162 |
| Mean | Stdev |
5_N3-32_H1-5 | 1.972 | 0.096 |
| Mean | Stdev |
5_O2-32_H21-5 | 1.906 | 0.131 |
| Mean | Stdev |
6_H41-31_O6-6 | 1.969 | 0.170 |
| Mean | Stdev |
6_N3-31_H1-6 | 1.962 | 0.092 |
| Mean | Stdev |
6_O2-31_H21-6 | 1.880 | 0.118 |
| Mean | Stdev |
7_H1-30_N3-7 | 1.969 | 0.099 |
| Mean | Stdev |
7_H21-30_O2-7 | 1.887 | 0.122 |
| Mean | Stdev |
7_O6-30_H41-7 | 1.965 | 0.180 |
| Mean | Stdev |
8_H61-29_O4-8 | 1.973 | 0.174 |
| Mean | Stdev |
8_N1-29_H3-8 | 1.993 | 0.130 |
| Mean | Stdev |
9_H61-28_O4-9 | 2.008 | 0.184 |
| Mean | Stdev |
9_N1-28_H3-9 | 1.973 | 0.119 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 1.9809 | 0.2055 |
1 | H1-N3_1-36 | 2.0008 | 0.1136 |
1 | H21-O2_1-36 | 1.9271 | 0.1487 |
2 | H41-O6_2-35 | 1.9490 | 0.1465 |
2 | N3-H1_2-35 | 1.9740 | 0.0908 |
2 | O2-H21_2-35 | 1.9077 | 0.1296 |
3 | O6-H41_3-34 | 1.9622 | 0.1549 |
3 | H1-N3_3-34 | 1.9587 | 0.0884 |
3 | H21-O2_3-34 | 1.8778 | 0.1194 |
4 | N1-H3_4-33 | 1.9927 | 0.1287 |
4 | H61-O4_4-33 | 1.9485 | 0.1540 |
5 | H41-O6_5-32 | 1.9753 | 0.1624 |
5 | N3-H1_5-32 | 1.9716 | 0.0961 |
5 | O2-H21_5-32 | 1.9061 | 0.1306 |
6 | H41-O6_6-31 | 1.9692 | 0.1703 |
6 | N3-H1_6-31 | 1.9623 | 0.0923 |
6 | O2-H21_6-31 | 1.8797 | 0.1181 |
7 | O6-H41_7-30 | 1.9649 | 0.1796 |
7 | H1-N3_7-30 | 1.9690 | 0.0994 |
7 | H21-O2_7-30 | 1.8875 | 0.1225 |
8 | N1-H3_8-29 | 1.9927 | 0.1301 |
8 | H61-O4_8-29 | 1.9734 | 0.1736 |
9 | N1-H3_9-28 | 1.9732 | 0.1186 |
9 | H61-O4_9-28 | 2.0079 | 0.1841 |
10 | H3-N1_10-27 | 1.9825 | 0.1216 |
10 | O4-H61_10-27 | 2.0005 | 0.1819 |
11 | O6-H41_11-26 | 1.9874 | 0.1879 |
11 | H1-N3_11-26 | 1.9875 | 0.1048 |
11 | H21-O2_11-26 | 1.8783 | 0.1165 |
12 | H3-N1_12-25 | 1.9984 | 0.1362 |
12 | O4-H61_12-25 | 1.9754 | 0.1787 |
13 | N1-H3_13-24 | 1.9541 | 0.1107 |
13 | H61-O4_13-24 | 2.0488 | 0.2222 |
14 | N1-H3_14-23 | 1.9920 | 0.1228 |
14 | H61-O4_14-23 | 2.0144 | 0.1924 |
15 | H3-N1_15-22 | 1.9883 | 0.1229 |
15 | O4-H61_15-22 | 2.0000 | 0.1792 |
16 | H3-N1_16-21 | 1.9598 | 0.1150 |
16 | O4-H61_16-21 | 1.9925 | 0.1755 |
17 | O6-H41_17-20 | 1.9577 | 0.1639 |
17 | H1-N3_17-20 | 1.9758 | 0.0986 |
17 | H21-O2_17-20 | 1.8988 | 0.1267 |
18 | H41-O6_18-19 | 1.9907 | 0.2865 |
18 | N3-H1_18-19 | 2.0041 | 0.1346 |
18 | O2-H21_18-19 | 1.9352 | 0.1793 |