Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
- |
C |
- |
G |
- |
G |
- |
A |
- |
G |
- |
G |
- |
G |
- |
C |
- |
C |
- |
G |
- |
G |
- |
G |
- |
T |
- |
G |
- |
G |
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G |
- |
C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
C |
- |
G |
- |
C |
- |
C |
- |
T |
- |
C |
- |
C |
- |
C |
- |
G |
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G |
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C |
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C |
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C |
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A |
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C |
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C |
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C |
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G |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.001 | 0.111 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.926 | 0.148 |
| Mean | Stdev |
1_O6-36_H41-1 | 1.977 | 0.189 |
| Mean | Stdev |
10_H41-27_O6-10 | 1.968 | 0.169 |
| Mean | Stdev |
10_N3-27_H1-10 | 1.963 | 0.091 |
| Mean | Stdev |
10_O2-27_H21-10 | 1.878 | 0.116 |
| Mean | Stdev |
11_H1-26_N3-11 | 1.964 | 0.091 |
| Mean | Stdev |
11_H21-26_O2-11 | 1.879 | 0.118 |
| Mean | Stdev |
11_O6-26_H41-11 | 1.966 | 0.164 |
| Mean | Stdev |
12_H1-25_N3-12 | 1.959 | 0.092 |
| Mean | Stdev |
12_H21-25_O2-12 | 1.905 | 0.129 |
| Mean | Stdev |
12_O6-25_H41-12 | 1.959 | 0.163 |
| Mean | Stdev |
13_H1-24_N3-13 | 1.971 | 0.095 |
| Mean | Stdev |
13_H21-24_O2-13 | 1.899 | 0.127 |
| Mean | Stdev |
13_O6-24_H41-13 | 1.968 | 0.159 |
| Mean | Stdev |
14_H3-23_N1-14 | 1.975 | 0.121 |
| Mean | Stdev |
14_O4-23_H61-14 | 1.964 | 0.161 |
| Mean | Stdev |
15_H1-22_N3-15 | 1.971 | 0.095 |
| Mean | Stdev |
15_H21-22_O2-15 | 1.874 | 0.116 |
| Mean | Stdev |
15_O6-22_H41-15 | 1.978 | 0.163 |
| Mean | Stdev |
16_H1-21_N3-16 | 1.962 | 0.090 |
| Mean | Stdev |
16_H21-21_O2-16 | 1.906 | 0.129 |
| Mean | Stdev |
16_O6-21_H41-16 | 1.951 | 0.149 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.961 | 0.091 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.898 | 0.122 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.948 | 0.152 |
| Mean | Stdev |
18_H41-19_O6-18 | 2.001 | 0.244 |
| Mean | Stdev |
18_N3-19_H1-18 | 2.004 | 0.148 |
| Mean | Stdev |
18_O2-19_H21-18 | 1.919 | 0.165 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.949 | 0.144 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.971 | 0.091 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.896 | 0.123 |
| Mean | Stdev |
3_H1-34_N3-3 | 1.957 | 0.089 |
| Mean | Stdev |
3_H21-34_O2-3 | 1.886 | 0.122 |
| Mean | Stdev |
3_O6-34_H41-3 | 1.954 | 0.148 |
| Mean | Stdev |
4_H1-33_N3-4 | 1.977 | 0.094 |
| Mean | Stdev |
4_H21-33_O2-4 | 1.930 | 0.141 |
| Mean | Stdev |
4_O6-33_H41-4 | 1.958 | 0.157 |
| Mean | Stdev |
5_H61-32_O4-5 | 2.007 | 0.212 |
| Mean | Stdev |
5_N1-32_H3-5 | 1.970 | 0.124 |
| Mean | Stdev |
6_H1-31_N3-6 | 1.965 | 0.095 |
| Mean | Stdev |
6_H21-31_O2-6 | 1.895 | 0.124 |
| Mean | Stdev |
6_O6-31_H41-6 | 1.978 | 0.168 |
| Mean | Stdev |
7_H1-30_N3-7 | 1.962 | 0.090 |
| Mean | Stdev |
7_H21-30_O2-7 | 1.898 | 0.125 |
| Mean | Stdev |
7_O6-30_H41-7 | 1.962 | 0.166 |
| Mean | Stdev |
8_H1-29_N3-8 | 1.959 | 0.090 |
| Mean | Stdev |
8_H21-29_O2-8 | 1.902 | 0.127 |
| Mean | Stdev |
8_O6-29_H41-8 | 1.949 | 0.146 |
| Mean | Stdev |
9_H41-28_O6-9 | 1.962 | 0.161 |
| Mean | Stdev |
9_N3-28_H1-9 | 1.971 | 0.092 |
| Mean | Stdev |
9_O2-28_H21-9 | 1.918 | 0.132 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 1.9766 | 0.1893 |
1 | H1-N3_1-36 | 2.0014 | 0.1106 |
1 | H21-O2_1-36 | 1.9256 | 0.1482 |
2 | H41-O6_2-35 | 1.9489 | 0.1441 |
2 | N3-H1_2-35 | 1.9708 | 0.0906 |
2 | O2-H21_2-35 | 1.8956 | 0.1235 |
3 | O6-H41_3-34 | 1.9536 | 0.1483 |
3 | H1-N3_3-34 | 1.9573 | 0.0890 |
3 | H21-O2_3-34 | 1.8862 | 0.1223 |
4 | O6-H41_4-33 | 1.9577 | 0.1566 |
4 | H1-N3_4-33 | 1.9767 | 0.0941 |
4 | H21-O2_4-33 | 1.9297 | 0.1410 |
5 | N1-H3_5-32 | 1.9703 | 0.1237 |
5 | H61-O4_5-32 | 2.0073 | 0.2116 |
6 | O6-H41_6-31 | 1.9783 | 0.1683 |
6 | H1-N3_6-31 | 1.9646 | 0.0949 |
6 | H21-O2_6-31 | 1.8946 | 0.1242 |
7 | O6-H41_7-30 | 1.9619 | 0.1660 |
7 | H1-N3_7-30 | 1.9624 | 0.0900 |
7 | H21-O2_7-30 | 1.8976 | 0.1250 |
8 | O6-H41_8-29 | 1.9494 | 0.1464 |
8 | H1-N3_8-29 | 1.9589 | 0.0903 |
8 | H21-O2_8-29 | 1.9019 | 0.1267 |
9 | H41-O6_9-28 | 1.9625 | 0.1612 |
9 | N3-H1_9-28 | 1.9709 | 0.0924 |
9 | O2-H21_9-28 | 1.9181 | 0.1322 |
10 | H41-O6_10-27 | 1.9685 | 0.1687 |
10 | N3-H1_10-27 | 1.9631 | 0.0913 |
10 | O2-H21_10-27 | 1.8780 | 0.1155 |
11 | O6-H41_11-26 | 1.9661 | 0.1640 |
11 | H1-N3_11-26 | 1.9641 | 0.0914 |
11 | H21-O2_11-26 | 1.8792 | 0.1183 |
12 | O6-H41_12-25 | 1.9587 | 0.1625 |
12 | H1-N3_12-25 | 1.9593 | 0.0925 |
12 | H21-O2_12-25 | 1.9053 | 0.1292 |
13 | O6-H41_13-24 | 1.9677 | 0.1594 |
13 | H1-N3_13-24 | 1.9708 | 0.0954 |
13 | H21-O2_13-24 | 1.8992 | 0.1272 |
14 | H3-N1_14-23 | 1.9754 | 0.1207 |
14 | O4-H61_14-23 | 1.9642 | 0.1612 |
15 | O6-H41_15-22 | 1.9780 | 0.1627 |
15 | H1-N3_15-22 | 1.9711 | 0.0946 |
15 | H21-O2_15-22 | 1.8742 | 0.1156 |
16 | O6-H41_16-21 | 1.9513 | 0.1490 |
16 | H1-N3_16-21 | 1.9624 | 0.0904 |
16 | H21-O2_16-21 | 1.9064 | 0.1293 |
17 | O6-H41_17-20 | 1.9481 | 0.1524 |
17 | H1-N3_17-20 | 1.9609 | 0.0908 |
17 | H21-O2_17-20 | 1.8979 | 0.1221 |
18 | H41-O6_18-19 | 2.0005 | 0.2444 |
18 | N3-H1_18-19 | 2.0037 | 0.1485 |
18 | O2-H21_18-19 | 1.9190 | 0.1645 |