Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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A |
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G |
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G |
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C |
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G |
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C |
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A |
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A |
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G |
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A |
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C |
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T |
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G |
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A |
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G |
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C |
3' |
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3' |
C |
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G |
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T |
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C |
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C |
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G |
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C |
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G |
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T |
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T |
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A |
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5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.873 | 2.160 |
| Mean | Stdev |
1_H21-36_O2-1 | 2.939 | 2.708 |
| Mean | Stdev |
1_O6-36_H41-1 | 3.162 | 2.648 |
| Mean | Stdev |
10_H61-27_O4-10 | 1.995 | 0.179 |
| Mean | Stdev |
10_N1-27_H3-10 | 1.969 | 0.121 |
| Mean | Stdev |
11_H1-26_N3-11 | 1.962 | 0.092 |
| Mean | Stdev |
11_H21-26_O2-11 | 1.912 | 0.133 |
| Mean | Stdev |
11_O6-26_H41-11 | 1.980 | 0.163 |
| Mean | Stdev |
12_H61-25_O4-12 | 1.995 | 0.193 |
| Mean | Stdev |
12_N1-25_H3-12 | 1.979 | 0.122 |
| Mean | Stdev |
13_H41-24_O6-13 | 2.017 | 0.184 |
| Mean | Stdev |
13_N3-24_H1-13 | 1.974 | 0.099 |
| Mean | Stdev |
13_O2-24_H21-13 | 1.904 | 0.131 |
| Mean | Stdev |
14_H3-23_N1-14 | 1.960 | 0.118 |
| Mean | Stdev |
14_O4-23_H61-14 | 2.022 | 0.215 |
| Mean | Stdev |
15_H1-22_N3-15 | 1.974 | 0.094 |
| Mean | Stdev |
15_H21-22_O2-15 | 1.889 | 0.122 |
| Mean | Stdev |
15_O6-22_H41-15 | 1.974 | 0.160 |
| Mean | Stdev |
16_H61-21_O4-16 | 1.989 | 0.191 |
| Mean | Stdev |
16_N1-21_H3-16 | 1.981 | 0.125 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.964 | 0.092 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.894 | 0.125 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.970 | 0.163 |
| Mean | Stdev |
18_H41-19_O6-18 | 2.001 | 0.250 |
| Mean | Stdev |
18_N3-19_H1-18 | 2.004 | 0.148 |
| Mean | Stdev |
18_O2-19_H21-18 | 1.920 | 0.166 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.957 | 0.178 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.977 | 0.120 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.907 | 0.143 |
| Mean | Stdev |
3_H61-34_O4-3 | 2.001 | 0.190 |
| Mean | Stdev |
3_N1-34_H3-3 | 1.965 | 0.116 |
| Mean | Stdev |
4_H1-33_N3-4 | 1.962 | 0.092 |
| Mean | Stdev |
4_H21-33_O2-4 | 1.894 | 0.123 |
| Mean | Stdev |
4_O6-33_H41-4 | 1.990 | 0.176 |
| Mean | Stdev |
5_H1-32_N3-5 | 1.963 | 0.091 |
| Mean | Stdev |
5_H21-32_O2-5 | 1.909 | 0.128 |
| Mean | Stdev |
5_O6-32_H41-5 | 1.954 | 0.154 |
| Mean | Stdev |
6_H41-31_O6-6 | 1.963 | 0.159 |
| Mean | Stdev |
6_N3-31_H1-6 | 1.965 | 0.089 |
| Mean | Stdev |
6_O2-31_H21-6 | 1.886 | 0.120 |
| Mean | Stdev |
7_H1-30_N3-7 | 1.968 | 0.091 |
| Mean | Stdev |
7_H21-30_O2-7 | 1.901 | 0.124 |
| Mean | Stdev |
7_O6-30_H41-7 | 1.945 | 0.146 |
| Mean | Stdev |
8_H41-29_O6-8 | 1.960 | 0.153 |
| Mean | Stdev |
8_N3-29_H1-8 | 1.977 | 0.093 |
| Mean | Stdev |
8_O2-29_H21-8 | 1.901 | 0.123 |
| Mean | Stdev |
9_H61-28_O4-9 | 1.997 | 0.178 |
| Mean | Stdev |
9_N1-28_H3-9 | 1.965 | 0.114 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 3.1620 | 2.6481 |
1 | H1-N3_1-36 | 2.8727 | 2.1602 |
1 | H21-O2_1-36 | 2.9395 | 2.7085 |
2 | H41-O6_2-35 | 1.9566 | 0.1782 |
2 | N3-H1_2-35 | 1.9772 | 0.1205 |
2 | O2-H21_2-35 | 1.9074 | 0.1434 |
3 | N1-H3_3-34 | 1.9650 | 0.1159 |
3 | H61-O4_3-34 | 2.0005 | 0.1895 |
4 | O6-H41_4-33 | 1.9903 | 0.1761 |
4 | H1-N3_4-33 | 1.9618 | 0.0924 |
4 | H21-O2_4-33 | 1.8936 | 0.1228 |
5 | O6-H41_5-32 | 1.9543 | 0.1541 |
5 | H1-N3_5-32 | 1.9634 | 0.0915 |
5 | H21-O2_5-32 | 1.9091 | 0.1278 |
6 | H41-O6_6-31 | 1.9627 | 0.1588 |
6 | N3-H1_6-31 | 1.9647 | 0.0889 |
6 | O2-H21_6-31 | 1.8864 | 0.1198 |
7 | O6-H41_7-30 | 1.9448 | 0.1456 |
7 | H1-N3_7-30 | 1.9679 | 0.0906 |
7 | H21-O2_7-30 | 1.9009 | 0.1236 |
8 | H41-O6_8-29 | 1.9600 | 0.1535 |
8 | N3-H1_8-29 | 1.9772 | 0.0930 |
8 | O2-H21_8-29 | 1.9015 | 0.1234 |
9 | N1-H3_9-28 | 1.9654 | 0.1138 |
9 | H61-O4_9-28 | 1.9970 | 0.1781 |
10 | N1-H3_10-27 | 1.9688 | 0.1214 |
10 | H61-O4_10-27 | 1.9951 | 0.1792 |
11 | O6-H41_11-26 | 1.9797 | 0.1632 |
11 | H1-N3_11-26 | 1.9623 | 0.0920 |
11 | H21-O2_11-26 | 1.9116 | 0.1332 |
12 | N1-H3_12-25 | 1.9794 | 0.1216 |
12 | H61-O4_12-25 | 1.9948 | 0.1929 |
13 | H41-O6_13-24 | 2.0171 | 0.1844 |
13 | N3-H1_13-24 | 1.9739 | 0.0994 |
13 | O2-H21_13-24 | 1.9044 | 0.1314 |
14 | H3-N1_14-23 | 1.9602 | 0.1179 |
14 | O4-H61_14-23 | 2.0224 | 0.2152 |
15 | O6-H41_15-22 | 1.9738 | 0.1599 |
15 | H1-N3_15-22 | 1.9739 | 0.0941 |
15 | H21-O2_15-22 | 1.8890 | 0.1219 |
16 | N1-H3_16-21 | 1.9810 | 0.1247 |
16 | H61-O4_16-21 | 1.9894 | 0.1909 |
17 | O6-H41_17-20 | 1.9704 | 0.1629 |
17 | H1-N3_17-20 | 1.9636 | 0.0918 |
17 | H21-O2_17-20 | 1.8944 | 0.1246 |
18 | H41-O6_18-19 | 2.0006 | 0.2501 |
18 | N3-H1_18-19 | 2.0038 | 0.1482 |
18 | O2-H21_18-19 | 1.9199 | 0.1657 |