Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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G |
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A |
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A |
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C |
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T |
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C |
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A |
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A |
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A |
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G |
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G |
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T |
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T |
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G |
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G |
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C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
C |
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G |
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C |
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T |
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T |
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G |
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A |
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G |
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T |
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T |
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T |
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C |
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C |
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A |
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A |
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C |
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C |
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G |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.006 | 0.181 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.931 | 0.221 |
| Mean | Stdev |
1_O6-36_H41-1 | 1.990 | 0.283 |
| Mean | Stdev |
10_H61-27_O4-10 | 1.988 | 0.171 |
| Mean | Stdev |
10_N1-27_H3-10 | 1.972 | 0.116 |
| Mean | Stdev |
11_H61-26_O4-11 | 2.016 | 0.185 |
| Mean | Stdev |
11_N1-26_H3-11 | 1.954 | 0.109 |
| Mean | Stdev |
12_H1-25_N3-12 | 1.955 | 0.090 |
| Mean | Stdev |
12_H21-25_O2-12 | 1.879 | 0.117 |
| Mean | Stdev |
12_O6-25_H41-12 | 1.983 | 0.172 |
| Mean | Stdev |
13_H1-24_N3-13 | 1.966 | 0.094 |
| Mean | Stdev |
13_H21-24_O2-13 | 1.894 | 0.126 |
| Mean | Stdev |
13_O6-24_H41-13 | 1.978 | 0.164 |
| Mean | Stdev |
14_H3-23_N1-14 | 1.977 | 0.117 |
| Mean | Stdev |
14_O4-23_H61-14 | 1.978 | 0.165 |
| Mean | Stdev |
15_H3-22_N1-15 | 1.968 | 0.120 |
| Mean | Stdev |
15_O4-22_H61-15 | 1.995 | 0.182 |
| Mean | Stdev |
16_H1-21_N3-16 | 1.968 | 0.098 |
| Mean | Stdev |
16_H21-21_O2-16 | 1.876 | 0.114 |
| Mean | Stdev |
16_O6-21_H41-16 | 1.976 | 0.171 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.969 | 0.093 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.908 | 0.125 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.956 | 0.154 |
| Mean | Stdev |
18_H41-19_O6-18 | 1.980 | 0.220 |
| Mean | Stdev |
18_N3-19_H1-18 | 1.999 | 0.147 |
| Mean | Stdev |
18_O2-19_H21-18 | 1.925 | 0.172 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.955 | 0.158 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.974 | 0.098 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.896 | 0.125 |
| Mean | Stdev |
3_H1-34_N3-3 | 1.966 | 0.092 |
| Mean | Stdev |
3_H21-34_O2-3 | 1.882 | 0.121 |
| Mean | Stdev |
3_O6-34_H41-3 | 1.963 | 0.155 |
| Mean | Stdev |
4_H61-33_O4-4 | 1.978 | 0.177 |
| Mean | Stdev |
4_N1-33_H3-4 | 1.990 | 0.130 |
| Mean | Stdev |
5_H61-32_O4-5 | 1.994 | 0.185 |
| Mean | Stdev |
5_N1-32_H3-5 | 1.963 | 0.114 |
| Mean | Stdev |
6_H41-31_O6-6 | 1.994 | 0.173 |
| Mean | Stdev |
6_N3-31_H1-6 | 1.963 | 0.095 |
| Mean | Stdev |
6_O2-31_H21-6 | 1.895 | 0.122 |
| Mean | Stdev |
7_H3-30_N1-7 | 1.970 | 0.123 |
| Mean | Stdev |
7_O4-30_H61-7 | 2.003 | 0.195 |
| Mean | Stdev |
8_H41-29_O6-8 | 1.981 | 0.169 |
| Mean | Stdev |
8_N3-29_H1-8 | 1.980 | 0.100 |
| Mean | Stdev |
8_O2-29_H21-8 | 1.887 | 0.123 |
| Mean | Stdev |
9_H61-28_O4-9 | 1.999 | 0.191 |
| Mean | Stdev |
9_N1-28_H3-9 | 1.979 | 0.128 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 1.9897 | 0.2833 |
1 | H1-N3_1-36 | 2.0057 | 0.1815 |
1 | H21-O2_1-36 | 1.9308 | 0.2208 |
2 | H41-O6_2-35 | 1.9553 | 0.1581 |
2 | N3-H1_2-35 | 1.9742 | 0.0978 |
2 | O2-H21_2-35 | 1.8959 | 0.1254 |
3 | O6-H41_3-34 | 1.9627 | 0.1546 |
3 | H1-N3_3-34 | 1.9659 | 0.0923 |
3 | H21-O2_3-34 | 1.8819 | 0.1211 |
4 | N1-H3_4-33 | 1.9905 | 0.1295 |
4 | H61-O4_4-33 | 1.9780 | 0.1766 |
5 | N1-H3_5-32 | 1.9629 | 0.1138 |
5 | H61-O4_5-32 | 1.9938 | 0.1848 |
6 | H41-O6_6-31 | 1.9944 | 0.1729 |
6 | N3-H1_6-31 | 1.9634 | 0.0947 |
6 | O2-H21_6-31 | 1.8955 | 0.1224 |
7 | H3-N1_7-30 | 1.9699 | 0.1226 |
7 | O4-H61_7-30 | 2.0027 | 0.1949 |
8 | H41-O6_8-29 | 1.9812 | 0.1691 |
8 | N3-H1_8-29 | 1.9796 | 0.0995 |
8 | O2-H21_8-29 | 1.8871 | 0.1231 |
9 | N1-H3_9-28 | 1.9791 | 0.1283 |
9 | H61-O4_9-28 | 1.9986 | 0.1913 |
10 | N1-H3_10-27 | 1.9715 | 0.1159 |
10 | H61-O4_10-27 | 1.9882 | 0.1711 |
11 | N1-H3_11-26 | 1.9535 | 0.1088 |
11 | H61-O4_11-26 | 2.0163 | 0.1853 |
12 | O6-H41_12-25 | 1.9826 | 0.1717 |
12 | H1-N3_12-25 | 1.9546 | 0.0902 |
12 | H21-O2_12-25 | 1.8789 | 0.1173 |
13 | O6-H41_13-24 | 1.9775 | 0.1640 |
13 | H1-N3_13-24 | 1.9660 | 0.0944 |
13 | H21-O2_13-24 | 1.8944 | 0.1263 |
14 | H3-N1_14-23 | 1.9773 | 0.1174 |
14 | O4-H61_14-23 | 1.9782 | 0.1645 |
15 | H3-N1_15-22 | 1.9675 | 0.1198 |
15 | O4-H61_15-22 | 1.9954 | 0.1825 |
16 | O6-H41_16-21 | 1.9762 | 0.1706 |
16 | H1-N3_16-21 | 1.9685 | 0.0975 |
16 | H21-O2_16-21 | 1.8761 | 0.1136 |
17 | O6-H41_17-20 | 1.9563 | 0.1539 |
17 | H1-N3_17-20 | 1.9694 | 0.0932 |
17 | H21-O2_17-20 | 1.9081 | 0.1252 |
18 | H41-O6_18-19 | 1.9802 | 0.2203 |
18 | N3-H1_18-19 | 1.9993 | 0.1475 |
18 | O2-H21_18-19 | 1.9253 | 0.1715 |