Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
|
1 |
|
2 |
|
3 |
|
4 |
|
5 |
|
6 |
|
7 |
|
8 |
|
9 |
|
10 |
|
11 |
|
12 |
|
13 |
|
14 |
|
15 |
|
16 |
|
17 |
|
18 |
|
5' |
G |
- |
C |
- |
T |
- |
A |
- |
C |
- |
G |
- |
C |
- |
G |
- |
G |
- |
A |
- |
T |
- |
C |
- |
G |
- |
A |
- |
G |
- |
A |
- |
G |
- |
C |
3' |
|
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
3' |
C |
- |
G |
- |
A |
- |
T |
- |
G |
- |
C |
- |
G |
- |
C |
- |
C |
- |
T |
- |
A |
- |
G |
- |
C |
- |
T |
- |
C |
- |
T |
- |
C |
- |
G |
5' |
|
36 |
|
35 |
|
34 |
|
33 |
|
32 |
|
31 |
|
30 |
|
29 |
|
28 |
|
27 |
|
26 |
|
25 |
|
24 |
|
23 |
|
22 |
|
21 |
|
20 |
|
19 |
|
Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.002 | 0.120 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.923 | 0.155 |
| Mean | Stdev |
1_O6-36_H41-1 | 1.994 | 0.207 |
| Mean | Stdev |
10_H61-27_O4-10 | 2.005 | 0.189 |
| Mean | Stdev |
10_N1-27_H3-10 | 1.984 | 0.121 |
| Mean | Stdev |
11_H3-26_N1-11 | 2.003 | 0.128 |
| Mean | Stdev |
11_O4-26_H61-11 | 1.990 | 0.182 |
| Mean | Stdev |
12_H41-25_O6-12 | 1.969 | 0.158 |
| Mean | Stdev |
12_N3-25_H1-12 | 1.969 | 0.092 |
| Mean | Stdev |
12_O2-25_H21-12 | 1.889 | 0.125 |
| Mean | Stdev |
13_H1-24_N3-13 | 1.968 | 0.093 |
| Mean | Stdev |
13_H21-24_O2-13 | 1.890 | 0.123 |
| Mean | Stdev |
13_O6-24_H41-13 | 1.954 | 0.152 |
| Mean | Stdev |
14_H61-23_O4-14 | 1.980 | 0.192 |
| Mean | Stdev |
14_N1-23_H3-14 | 1.991 | 0.129 |
| Mean | Stdev |
15_H1-22_N3-15 | 1.969 | 0.097 |
| Mean | Stdev |
15_H21-22_O2-15 | 1.906 | 0.130 |
| Mean | Stdev |
15_O6-22_H41-15 | 1.982 | 0.169 |
| Mean | Stdev |
16_H61-21_O4-16 | 2.007 | 0.203 |
| Mean | Stdev |
16_N1-21_H3-16 | 1.970 | 0.119 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.965 | 0.096 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.901 | 0.128 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.975 | 0.166 |
| Mean | Stdev |
18_H41-19_O6-18 | 2.430 | 1.657 |
| Mean | Stdev |
18_N3-19_H1-18 | 2.445 | 1.693 |
| Mean | Stdev |
18_O2-19_H21-18 | 2.468 | 2.111 |
| Mean | Stdev |
2_H41-35_O6-2 | 2.005 | 0.178 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.972 | 0.098 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.891 | 0.123 |
| Mean | Stdev |
3_H3-34_N1-3 | 1.958 | 0.111 |
| Mean | Stdev |
3_O4-34_H61-3 | 2.030 | 0.219 |
| Mean | Stdev |
4_H61-33_O4-4 | 1.957 | 0.174 |
| Mean | Stdev |
4_N1-33_H3-4 | 2.011 | 0.141 |
| Mean | Stdev |
5_H41-32_O6-5 | 1.974 | 0.158 |
| Mean | Stdev |
5_N3-32_H1-5 | 1.977 | 0.097 |
| Mean | Stdev |
5_O2-32_H21-5 | 1.888 | 0.120 |
| Mean | Stdev |
6_H1-31_N3-6 | 1.966 | 0.089 |
| Mean | Stdev |
6_H21-31_O2-6 | 1.892 | 0.119 |
| Mean | Stdev |
6_O6-31_H41-6 | 1.951 | 0.147 |
| Mean | Stdev |
7_H41-30_O6-7 | 1.955 | 0.147 |
| Mean | Stdev |
7_N3-30_H1-7 | 1.970 | 0.091 |
| Mean | Stdev |
7_O2-30_H21-7 | 1.895 | 0.121 |
| Mean | Stdev |
8_H1-29_N3-8 | 1.962 | 0.089 |
| Mean | Stdev |
8_H21-29_O2-8 | 1.882 | 0.120 |
| Mean | Stdev |
8_O6-29_H41-8 | 1.957 | 0.154 |
| Mean | Stdev |
9_H1-28_N3-9 | 1.973 | 0.093 |
| Mean | Stdev |
9_H21-28_O2-9 | 1.937 | 0.146 |
| Mean | Stdev |
9_O6-28_H41-9 | 1.974 | 0.163 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 1.9941 | 0.2072 |
1 | H1-N3_1-36 | 2.0023 | 0.1202 |
1 | H21-O2_1-36 | 1.9227 | 0.1548 |
2 | H41-O6_2-35 | 2.0053 | 0.1783 |
2 | N3-H1_2-35 | 1.9724 | 0.0977 |
2 | O2-H21_2-35 | 1.8914 | 0.1232 |
3 | H3-N1_3-34 | 1.9583 | 0.1114 |
3 | O4-H61_3-34 | 2.0303 | 0.2192 |
4 | N1-H3_4-33 | 2.0114 | 0.1412 |
4 | H61-O4_4-33 | 1.9567 | 0.1745 |
5 | H41-O6_5-32 | 1.9738 | 0.1583 |
5 | N3-H1_5-32 | 1.9774 | 0.0965 |
5 | O2-H21_5-32 | 1.8878 | 0.1197 |
6 | O6-H41_6-31 | 1.9512 | 0.1469 |
6 | H1-N3_6-31 | 1.9657 | 0.0890 |
6 | H21-O2_6-31 | 1.8916 | 0.1189 |
7 | H41-O6_7-30 | 1.9548 | 0.1475 |
7 | N3-H1_7-30 | 1.9698 | 0.0907 |
7 | O2-H21_7-30 | 1.8945 | 0.1209 |
8 | O6-H41_8-29 | 1.9567 | 0.1542 |
8 | H1-N3_8-29 | 1.9622 | 0.0895 |
8 | H21-O2_8-29 | 1.8823 | 0.1198 |
9 | O6-H41_9-28 | 1.9736 | 0.1629 |
9 | H1-N3_9-28 | 1.9730 | 0.0928 |
9 | H21-O2_9-28 | 1.9371 | 0.1456 |
10 | N1-H3_10-27 | 1.9842 | 0.1211 |
10 | H61-O4_10-27 | 2.0054 | 0.1887 |
11 | H3-N1_11-26 | 2.0026 | 0.1284 |
11 | O4-H61_11-26 | 1.9895 | 0.1824 |
12 | H41-O6_12-25 | 1.9692 | 0.1575 |
12 | N3-H1_12-25 | 1.9686 | 0.0917 |
12 | O2-H21_12-25 | 1.8894 | 0.1247 |
13 | O6-H41_13-24 | 1.9537 | 0.1519 |
13 | H1-N3_13-24 | 1.9681 | 0.0927 |
13 | H21-O2_13-24 | 1.8903 | 0.1231 |
14 | N1-H3_14-23 | 1.9911 | 0.1288 |
14 | H61-O4_14-23 | 1.9795 | 0.1917 |
15 | O6-H41_15-22 | 1.9820 | 0.1689 |
15 | H1-N3_15-22 | 1.9694 | 0.0965 |
15 | H21-O2_15-22 | 1.9056 | 0.1301 |
16 | N1-H3_16-21 | 1.9702 | 0.1187 |
16 | H61-O4_16-21 | 2.0068 | 0.2032 |
17 | O6-H41_17-20 | 1.9748 | 0.1657 |
17 | H1-N3_17-20 | 1.9654 | 0.0958 |
17 | H21-O2_17-20 | 1.9015 | 0.1283 |
18 | H41-O6_18-19 | 2.4301 | 1.6567 |
18 | N3-H1_18-19 | 2.4446 | 1.6933 |
18 | O2-H21_18-19 | 2.4683 | 2.1110 |