Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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A |
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G |
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A |
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A |
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A |
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C |
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A |
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G |
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C |
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T |
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C |
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T |
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G |
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C |
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G |
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C |
3' |
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x |
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3' |
C |
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G |
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T |
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C |
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T |
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T |
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T |
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G |
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T |
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C |
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G |
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A |
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G |
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A |
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C |
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G |
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C |
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G |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.003 | 0.130 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.929 | 0.156 |
| Mean | Stdev |
1_O6-36_H41-1 | 1.979 | 0.210 |
| Mean | Stdev |
10_H1-27_N3-10 | 1.969 | 0.095 |
| Mean | Stdev |
10_H21-27_O2-10 | 1.903 | 0.129 |
| Mean | Stdev |
10_O6-27_H41-10 | 2.021 | 0.188 |
| Mean | Stdev |
11_H41-26_O6-11 | 2.006 | 0.183 |
| Mean | Stdev |
11_N3-26_H1-11 | 1.960 | 0.096 |
| Mean | Stdev |
11_O2-26_H21-11 | 1.890 | 0.120 |
| Mean | Stdev |
12_H3-25_N1-12 | 1.970 | 0.119 |
| Mean | Stdev |
12_O4-25_H61-12 | 1.999 | 0.190 |
| Mean | Stdev |
13_H41-24_O6-13 | 1.990 | 0.180 |
| Mean | Stdev |
13_N3-24_H1-13 | 1.979 | 0.100 |
| Mean | Stdev |
13_O2-24_H21-13 | 1.917 | 0.136 |
| Mean | Stdev |
14_H3-23_N1-14 | 1.968 | 0.119 |
| Mean | Stdev |
14_O4-23_H61-14 | 1.996 | 0.189 |
| Mean | Stdev |
15_H1-22_N3-15 | 1.973 | 0.092 |
| Mean | Stdev |
15_H21-22_O2-15 | 1.900 | 0.125 |
| Mean | Stdev |
15_O6-22_H41-15 | 1.955 | 0.148 |
| Mean | Stdev |
16_H41-21_O6-16 | 1.956 | 0.149 |
| Mean | Stdev |
16_N3-21_H1-16 | 1.969 | 0.093 |
| Mean | Stdev |
16_O2-21_H21-16 | 1.899 | 0.124 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.968 | 0.092 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.888 | 0.121 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.957 | 0.153 |
| Mean | Stdev |
18_H41-19_O6-18 | 1.994 | 0.261 |
| Mean | Stdev |
18_N3-19_H1-18 | 2.006 | 0.145 |
| Mean | Stdev |
18_O2-19_H21-18 | 1.924 | 0.167 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.958 | 0.154 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.975 | 0.094 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.897 | 0.126 |
| Mean | Stdev |
3_H61-34_O4-3 | 1.993 | 0.217 |
| Mean | Stdev |
3_N1-34_H3-3 | 1.970 | 0.163 |
| Mean | Stdev |
4_H1-33_N3-4 | 1.978 | 0.098 |
| Mean | Stdev |
4_H21-33_O2-4 | 1.908 | 0.134 |
| Mean | Stdev |
4_O6-33_H41-4 | 1.986 | 0.169 |
| Mean | Stdev |
5_H61-32_O4-5 | 2.005 | 0.197 |
| Mean | Stdev |
5_N1-32_H3-5 | 1.988 | 0.125 |
| Mean | Stdev |
6_H61-31_O4-6 | 1.985 | 0.178 |
| Mean | Stdev |
6_N1-31_H3-6 | 1.966 | 0.118 |
| Mean | Stdev |
7_H61-30_O4-7 | 1.981 | 0.175 |
| Mean | Stdev |
7_N1-30_H3-7 | 1.977 | 0.124 |
| Mean | Stdev |
8_H41-29_O6-8 | 2.007 | 0.217 |
| Mean | Stdev |
8_N3-29_H1-8 | 1.984 | 0.121 |
| Mean | Stdev |
8_O2-29_H21-8 | 1.899 | 0.127 |
| Mean | Stdev |
9_H61-28_O4-9 | 2.003 | 0.192 |
| Mean | Stdev |
9_N1-28_H3-9 | 1.959 | 0.116 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 1.9787 | 0.2099 |
1 | H1-N3_1-36 | 2.0030 | 0.1301 |
1 | H21-O2_1-36 | 1.9287 | 0.1562 |
2 | H41-O6_2-35 | 1.9577 | 0.1537 |
2 | N3-H1_2-35 | 1.9749 | 0.0937 |
2 | O2-H21_2-35 | 1.8973 | 0.1255 |
3 | N1-H3_3-34 | 1.9695 | 0.1630 |
3 | H61-O4_3-34 | 1.9934 | 0.2170 |
4 | O6-H41_4-33 | 1.9861 | 0.1688 |
4 | H1-N3_4-33 | 1.9782 | 0.0982 |
4 | H21-O2_4-33 | 1.9084 | 0.1337 |
5 | N1-H3_5-32 | 1.9880 | 0.1252 |
5 | H61-O4_5-32 | 2.0052 | 0.1966 |
6 | N1-H3_6-31 | 1.9662 | 0.1183 |
6 | H61-O4_6-31 | 1.9850 | 0.1781 |
7 | N1-H3_7-30 | 1.9773 | 0.1237 |
7 | H61-O4_7-30 | 1.9810 | 0.1749 |
8 | H41-O6_8-29 | 2.0074 | 0.2167 |
8 | N3-H1_8-29 | 1.9841 | 0.1209 |
8 | O2-H21_8-29 | 1.8990 | 0.1268 |
9 | N1-H3_9-28 | 1.9591 | 0.1157 |
9 | H61-O4_9-28 | 2.0027 | 0.1922 |
10 | O6-H41_10-27 | 2.0209 | 0.1877 |
10 | H1-N3_10-27 | 1.9690 | 0.0946 |
10 | H21-O2_10-27 | 1.9035 | 0.1287 |
11 | H41-O6_11-26 | 2.0056 | 0.1829 |
11 | N3-H1_11-26 | 1.9605 | 0.0958 |
11 | O2-H21_11-26 | 1.8901 | 0.1205 |
12 | H3-N1_12-25 | 1.9697 | 0.1186 |
12 | O4-H61_12-25 | 1.9994 | 0.1897 |
13 | H41-O6_13-24 | 1.9905 | 0.1803 |
13 | N3-H1_13-24 | 1.9788 | 0.0998 |
13 | O2-H21_13-24 | 1.9170 | 0.1359 |
14 | H3-N1_14-23 | 1.9681 | 0.1191 |
14 | O4-H61_14-23 | 1.9962 | 0.1890 |
15 | O6-H41_15-22 | 1.9551 | 0.1481 |
15 | H1-N3_15-22 | 1.9728 | 0.0923 |
15 | H21-O2_15-22 | 1.9000 | 0.1248 |
16 | H41-O6_16-21 | 1.9564 | 0.1488 |
16 | N3-H1_16-21 | 1.9693 | 0.0932 |
16 | O2-H21_16-21 | 1.8990 | 0.1240 |
17 | O6-H41_17-20 | 1.9566 | 0.1526 |
17 | H1-N3_17-20 | 1.9680 | 0.0920 |
17 | H21-O2_17-20 | 1.8884 | 0.1215 |
18 | H41-O6_18-19 | 1.9936 | 0.2610 |
18 | N3-H1_18-19 | 2.0059 | 0.1452 |
18 | O2-H21_18-19 | 1.9239 | 0.1666 |