Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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G |
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A |
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C |
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C |
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G |
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A |
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A |
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T |
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G |
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T |
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A |
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A |
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T |
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T |
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G |
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C |
3' |
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3' |
C |
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G |
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C |
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T |
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G |
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G |
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C |
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T |
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T |
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A |
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C |
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A |
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T |
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T |
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A |
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A |
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C |
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G |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.008 | 0.193 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.932 | 0.216 |
| Mean | Stdev |
1_O6-36_H41-1 | 2.006 | 0.376 |
| Mean | Stdev |
10_H3-27_N1-10 | 1.980 | 0.117 |
| Mean | Stdev |
10_O4-27_H61-10 | 1.990 | 0.172 |
| Mean | Stdev |
11_H1-26_N3-11 | 1.986 | 0.098 |
| Mean | Stdev |
11_H21-26_O2-11 | 1.881 | 0.112 |
| Mean | Stdev |
11_O6-26_H41-11 | 1.976 | 0.163 |
| Mean | Stdev |
12_H3-25_N1-12 | 2.034 | 0.139 |
| Mean | Stdev |
12_O4-25_H61-12 | 1.928 | 0.143 |
| Mean | Stdev |
13_H61-24_O4-13 | 2.003 | 0.186 |
| Mean | Stdev |
13_N1-24_H3-13 | 1.949 | 0.105 |
| Mean | Stdev |
14_H61-23_O4-14 | 1.996 | 0.178 |
| Mean | Stdev |
14_N1-23_H3-14 | 1.995 | 0.119 |
| Mean | Stdev |
15_H3-22_N1-15 | 1.992 | 0.122 |
| Mean | Stdev |
15_O4-22_H61-15 | 2.001 | 0.176 |
| Mean | Stdev |
16_H3-21_N1-16 | 1.963 | 0.138 |
| Mean | Stdev |
16_O4-21_H61-16 | 1.987 | 0.200 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.975 | 0.095 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.899 | 0.126 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.961 | 0.150 |
| Mean | Stdev |
18_H41-19_O6-18 | 2.034 | 0.543 |
| Mean | Stdev |
18_N3-19_H1-18 | 2.019 | 0.233 |
| Mean | Stdev |
18_O2-19_H21-18 | 1.938 | 0.212 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.952 | 0.149 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.973 | 0.092 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.899 | 0.125 |
| Mean | Stdev |
3_H1-34_N3-3 | 1.963 | 0.090 |
| Mean | Stdev |
3_H21-34_O2-3 | 1.874 | 0.118 |
| Mean | Stdev |
3_O6-34_H41-3 | 1.963 | 0.153 |
| Mean | Stdev |
4_H61-33_O4-4 | 1.956 | 0.167 |
| Mean | Stdev |
4_N1-33_H3-4 | 1.994 | 0.125 |
| Mean | Stdev |
5_H41-32_O6-5 | 1.978 | 0.160 |
| Mean | Stdev |
5_N3-32_H1-5 | 1.974 | 0.097 |
| Mean | Stdev |
5_O2-32_H21-5 | 1.916 | 0.133 |
| Mean | Stdev |
6_H41-31_O6-6 | 1.973 | 0.192 |
| Mean | Stdev |
6_N3-31_H1-6 | 1.964 | 0.101 |
| Mean | Stdev |
6_O2-31_H21-6 | 1.877 | 0.118 |
| Mean | Stdev |
7_H1-30_N3-7 | 1.969 | 0.092 |
| Mean | Stdev |
7_H21-30_O2-7 | 1.891 | 0.126 |
| Mean | Stdev |
7_O6-30_H41-7 | 1.966 | 0.158 |
| Mean | Stdev |
8_H61-29_O4-8 | 1.982 | 0.173 |
| Mean | Stdev |
8_N1-29_H3-8 | 1.986 | 0.126 |
| Mean | Stdev |
9_H61-28_O4-9 | 2.014 | 0.183 |
| Mean | Stdev |
9_N1-28_H3-9 | 1.972 | 0.117 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 2.0063 | 0.3758 |
1 | H1-N3_1-36 | 2.0077 | 0.1932 |
1 | H21-O2_1-36 | 1.9323 | 0.2162 |
2 | H41-O6_2-35 | 1.9525 | 0.1494 |
2 | N3-H1_2-35 | 1.9727 | 0.0923 |
2 | O2-H21_2-35 | 1.8991 | 0.1253 |
3 | O6-H41_3-34 | 1.9629 | 0.1533 |
3 | H1-N3_3-34 | 1.9627 | 0.0904 |
3 | H21-O2_3-34 | 1.8741 | 0.1184 |
4 | N1-H3_4-33 | 1.9940 | 0.1249 |
4 | H61-O4_4-33 | 1.9557 | 0.1668 |
5 | H41-O6_5-32 | 1.9777 | 0.1601 |
5 | N3-H1_5-32 | 1.9741 | 0.0970 |
5 | O2-H21_5-32 | 1.9157 | 0.1325 |
6 | H41-O6_6-31 | 1.9734 | 0.1920 |
6 | N3-H1_6-31 | 1.9644 | 0.1006 |
6 | O2-H21_6-31 | 1.8768 | 0.1183 |
7 | O6-H41_7-30 | 1.9665 | 0.1577 |
7 | H1-N3_7-30 | 1.9692 | 0.0921 |
7 | H21-O2_7-30 | 1.8908 | 0.1255 |
8 | N1-H3_8-29 | 1.9859 | 0.1256 |
8 | H61-O4_8-29 | 1.9816 | 0.1734 |
9 | N1-H3_9-28 | 1.9721 | 0.1170 |
9 | H61-O4_9-28 | 2.0139 | 0.1833 |
10 | H3-N1_10-27 | 1.9803 | 0.1168 |
10 | O4-H61_10-27 | 1.9903 | 0.1717 |
11 | O6-H41_11-26 | 1.9765 | 0.1627 |
11 | H1-N3_11-26 | 1.9859 | 0.0977 |
11 | H21-O2_11-26 | 1.8813 | 0.1124 |
12 | H3-N1_12-25 | 2.0339 | 0.1389 |
12 | O4-H61_12-25 | 1.9279 | 0.1433 |
13 | N1-H3_13-24 | 1.9494 | 0.1051 |
13 | H61-O4_13-24 | 2.0026 | 0.1864 |
14 | N1-H3_14-23 | 1.9949 | 0.1188 |
14 | H61-O4_14-23 | 1.9955 | 0.1777 |
15 | H3-N1_15-22 | 1.9917 | 0.1219 |
15 | O4-H61_15-22 | 2.0005 | 0.1761 |
16 | H3-N1_16-21 | 1.9634 | 0.1377 |
16 | O4-H61_16-21 | 1.9868 | 0.2000 |
17 | O6-H41_17-20 | 1.9613 | 0.1503 |
17 | H1-N3_17-20 | 1.9751 | 0.0951 |
17 | H21-O2_17-20 | 1.8990 | 0.1264 |
18 | H41-O6_18-19 | 2.0339 | 0.5435 |
18 | N3-H1_18-19 | 2.0195 | 0.2326 |
18 | O2-H21_18-19 | 1.9384 | 0.2124 |