Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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G |
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T |
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C |
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G |
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G |
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T |
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C |
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G |
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G |
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T |
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C |
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G |
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G |
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T |
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G |
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C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
C |
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G |
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C |
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A |
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G |
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C |
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C |
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A |
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G |
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C |
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C |
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A |
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G |
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C |
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C |
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A |
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C |
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G |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.835 | 2.656 |
| Mean | Stdev |
1_H21-36_O2-1 | 2.899 | 3.007 |
| Mean | Stdev |
1_O6-36_H41-1 | 2.853 | 2.698 |
| Mean | Stdev |
10_H1-27_N3-10 | 1.965 | 0.095 |
| Mean | Stdev |
10_H21-27_O2-10 | 1.878 | 0.117 |
| Mean | Stdev |
10_O6-27_H41-10 | 1.983 | 0.182 |
| Mean | Stdev |
11_H1-26_N3-11 | 1.964 | 0.093 |
| Mean | Stdev |
11_H21-26_O2-11 | 1.908 | 0.132 |
| Mean | Stdev |
11_O6-26_H41-11 | 1.987 | 0.168 |
| Mean | Stdev |
12_H3-25_N1-12 | 1.984 | 0.122 |
| Mean | Stdev |
12_O4-25_H61-12 | 1.966 | 0.168 |
| Mean | Stdev |
13_H41-24_O6-13 | 1.964 | 0.169 |
| Mean | Stdev |
13_N3-24_H1-13 | 1.966 | 0.094 |
| Mean | Stdev |
13_O2-24_H21-13 | 1.891 | 0.125 |
| Mean | Stdev |
14_H1-23_N3-14 | 1.967 | 0.096 |
| Mean | Stdev |
14_H21-23_O2-14 | 1.881 | 0.118 |
| Mean | Stdev |
14_O6-23_H41-14 | 1.979 | 0.180 |
| Mean | Stdev |
15_H1-22_N3-15 | 1.970 | 0.098 |
| Mean | Stdev |
15_H21-22_O2-15 | 1.910 | 0.132 |
| Mean | Stdev |
15_O6-22_H41-15 | 1.990 | 0.178 |
| Mean | Stdev |
16_H3-21_N1-16 | 1.969 | 0.121 |
| Mean | Stdev |
16_O4-21_H61-16 | 1.994 | 0.187 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.982 | 0.133 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.908 | 0.148 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.973 | 0.233 |
| Mean | Stdev |
18_H41-19_O6-18 | 2.268 | 1.619 |
| Mean | Stdev |
18_N3-19_H1-18 | 2.229 | 1.377 |
| Mean | Stdev |
18_O2-19_H21-18 | 2.156 | 1.417 |
| Mean | Stdev |
2_H41-35_O6-2 | 2.049 | 0.490 |
| Mean | Stdev |
2_N3-35_H1-2 | 2.007 | 0.219 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.917 | 0.185 |
| Mean | Stdev |
3_H1-34_N3-3 | 1.966 | 0.097 |
| Mean | Stdev |
3_H21-34_O2-3 | 1.887 | 0.120 |
| Mean | Stdev |
3_O6-34_H41-3 | 1.989 | 0.169 |
| Mean | Stdev |
4_H3-33_N1-4 | 1.996 | 0.125 |
| Mean | Stdev |
4_O4-33_H61-4 | 1.969 | 0.172 |
| Mean | Stdev |
5_H41-32_O6-5 | 1.962 | 0.165 |
| Mean | Stdev |
5_N3-32_H1-5 | 1.970 | 0.096 |
| Mean | Stdev |
5_O2-32_H21-5 | 1.896 | 0.123 |
| Mean | Stdev |
6_H1-31_N3-6 | 1.968 | 0.110 |
| Mean | Stdev |
6_H21-31_O2-6 | 1.881 | 0.120 |
| Mean | Stdev |
6_O6-31_H41-6 | 1.991 | 0.229 |
| Mean | Stdev |
7_H1-30_N3-7 | 1.966 | 0.095 |
| Mean | Stdev |
7_H21-30_O2-7 | 1.903 | 0.130 |
| Mean | Stdev |
7_O6-30_H41-7 | 1.991 | 0.175 |
| Mean | Stdev |
8_H3-29_N1-8 | 1.986 | 0.123 |
| Mean | Stdev |
8_O4-29_H61-8 | 1.973 | 0.175 |
| Mean | Stdev |
9_H41-28_O6-9 | 1.967 | 0.160 |
| Mean | Stdev |
9_N3-28_H1-9 | 1.969 | 0.093 |
| Mean | Stdev |
9_O2-28_H21-9 | 1.895 | 0.124 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 2.8529 | 2.6983 |
1 | H1-N3_1-36 | 2.8349 | 2.6556 |
1 | H21-O2_1-36 | 2.8991 | 3.0074 |
2 | H41-O6_2-35 | 2.0485 | 0.4899 |
2 | N3-H1_2-35 | 2.0073 | 0.2187 |
2 | O2-H21_2-35 | 1.9173 | 0.1852 |
3 | O6-H41_3-34 | 1.9894 | 0.1690 |
3 | H1-N3_3-34 | 1.9658 | 0.0969 |
3 | H21-O2_3-34 | 1.8870 | 0.1205 |
4 | H3-N1_4-33 | 1.9955 | 0.1252 |
4 | O4-H61_4-33 | 1.9688 | 0.1715 |
5 | H41-O6_5-32 | 1.9621 | 0.1648 |
5 | N3-H1_5-32 | 1.9700 | 0.0956 |
5 | O2-H21_5-32 | 1.8962 | 0.1235 |
6 | O6-H41_6-31 | 1.9908 | 0.2293 |
6 | H1-N3_6-31 | 1.9681 | 0.1102 |
6 | H21-O2_6-31 | 1.8812 | 0.1202 |
7 | O6-H41_7-30 | 1.9914 | 0.1751 |
7 | H1-N3_7-30 | 1.9655 | 0.0946 |
7 | H21-O2_7-30 | 1.9033 | 0.1296 |
8 | H3-N1_8-29 | 1.9865 | 0.1234 |
8 | O4-H61_8-29 | 1.9731 | 0.1747 |
9 | H41-O6_9-28 | 1.9674 | 0.1596 |
9 | N3-H1_9-28 | 1.9692 | 0.0930 |
9 | O2-H21_9-28 | 1.8952 | 0.1239 |
10 | O6-H41_10-27 | 1.9833 | 0.1816 |
10 | H1-N3_10-27 | 1.9651 | 0.0949 |
10 | H21-O2_10-27 | 1.8782 | 0.1168 |
11 | O6-H41_11-26 | 1.9872 | 0.1683 |
11 | H1-N3_11-26 | 1.9638 | 0.0935 |
11 | H21-O2_11-26 | 1.9081 | 0.1317 |
12 | H3-N1_12-25 | 1.9842 | 0.1224 |
12 | O4-H61_12-25 | 1.9663 | 0.1682 |
13 | H41-O6_13-24 | 1.9643 | 0.1691 |
13 | N3-H1_13-24 | 1.9662 | 0.0940 |
13 | O2-H21_13-24 | 1.8912 | 0.1247 |
14 | O6-H41_14-23 | 1.9790 | 0.1800 |
14 | H1-N3_14-23 | 1.9674 | 0.0964 |
14 | H21-O2_14-23 | 1.8814 | 0.1179 |
15 | O6-H41_15-22 | 1.9905 | 0.1777 |
15 | H1-N3_15-22 | 1.9696 | 0.0977 |
15 | H21-O2_15-22 | 1.9100 | 0.1324 |
16 | H3-N1_16-21 | 1.9690 | 0.1208 |
16 | O4-H61_16-21 | 1.9944 | 0.1874 |
17 | O6-H41_17-20 | 1.9733 | 0.2327 |
17 | H1-N3_17-20 | 1.9823 | 0.1326 |
17 | H21-O2_17-20 | 1.9081 | 0.1484 |
18 | H41-O6_18-19 | 2.2683 | 1.6194 |
18 | N3-H1_18-19 | 2.2293 | 1.3772 |
18 | O2-H21_18-19 | 2.1563 | 1.4172 |