Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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T |
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G |
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C |
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G |
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T |
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G |
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C |
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G |
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T |
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G |
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C |
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G |
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T |
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G |
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G |
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C |
3' |
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3' |
C |
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G |
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A |
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C |
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G |
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C |
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A |
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C |
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G |
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C |
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A |
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A |
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C |
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5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.893 | 2.119 |
| Mean | Stdev |
1_H21-36_O2-1 | 3.077 | 2.828 |
| Mean | Stdev |
1_O6-36_H41-1 | 2.949 | 2.274 |
| Mean | Stdev |
10_H1-27_N3-10 | 1.974 | 0.103 |
| Mean | Stdev |
10_H21-27_O2-10 | 1.890 | 0.123 |
| Mean | Stdev |
10_O6-27_H41-10 | 1.992 | 0.184 |
| Mean | Stdev |
11_H3-26_N1-11 | 1.986 | 0.126 |
| Mean | Stdev |
11_O4-26_H61-11 | 2.006 | 0.217 |
| Mean | Stdev |
12_H1-25_N3-12 | 1.973 | 0.096 |
| Mean | Stdev |
12_H21-25_O2-12 | 1.903 | 0.128 |
| Mean | Stdev |
12_O6-25_H41-12 | 1.962 | 0.165 |
| Mean | Stdev |
13_H41-24_O6-13 | 1.949 | 0.152 |
| Mean | Stdev |
13_N3-24_H1-13 | 1.963 | 0.092 |
| Mean | Stdev |
13_O2-24_H21-13 | 1.902 | 0.128 |
| Mean | Stdev |
14_H1-23_N3-14 | 1.973 | 0.100 |
| Mean | Stdev |
14_H21-23_O2-14 | 1.887 | 0.120 |
| Mean | Stdev |
14_O6-23_H41-14 | 1.984 | 0.171 |
| Mean | Stdev |
15_H3-22_N1-15 | 2.003 | 0.279 |
| Mean | Stdev |
15_O4-22_H61-15 | 2.006 | 0.334 |
| Mean | Stdev |
16_H1-21_N3-16 | 1.964 | 0.101 |
| Mean | Stdev |
16_H21-21_O2-16 | 1.885 | 0.121 |
| Mean | Stdev |
16_O6-21_H41-16 | 1.981 | 0.199 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.974 | 0.095 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.916 | 0.131 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.968 | 0.162 |
| Mean | Stdev |
18_H41-19_O6-18 | 1.994 | 0.263 |
| Mean | Stdev |
18_N3-19_H1-18 | 1.997 | 0.144 |
| Mean | Stdev |
18_O2-19_H21-18 | 1.917 | 0.158 |
| Mean | Stdev |
2_H41-35_O6-2 | 2.069 | 0.661 |
| Mean | Stdev |
2_N3-35_H1-2 | 2.048 | 0.474 |
| Mean | Stdev |
2_O2-35_H21-2 | 2.012 | 0.593 |
| Mean | Stdev |
3_H3-34_N1-3 | 1.967 | 0.178 |
| Mean | Stdev |
3_O4-34_H61-3 | 2.047 | 0.279 |
| Mean | Stdev |
4_H1-33_N3-4 | 1.972 | 0.092 |
| Mean | Stdev |
4_H21-33_O2-4 | 1.901 | 0.125 |
| Mean | Stdev |
4_O6-33_H41-4 | 1.956 | 0.151 |
| Mean | Stdev |
5_H41-32_O6-5 | 1.951 | 0.152 |
| Mean | Stdev |
5_N3-32_H1-5 | 1.964 | 0.090 |
| Mean | Stdev |
5_O2-32_H21-5 | 1.901 | 0.127 |
| Mean | Stdev |
6_H1-31_N3-6 | 1.974 | 0.099 |
| Mean | Stdev |
6_H21-31_O2-6 | 1.892 | 0.123 |
| Mean | Stdev |
6_O6-31_H41-6 | 1.985 | 0.175 |
| Mean | Stdev |
7_H3-30_N1-7 | 1.984 | 0.132 |
| Mean | Stdev |
7_O4-30_H61-7 | 2.007 | 0.214 |
| Mean | Stdev |
8_H1-29_N3-8 | 1.969 | 0.094 |
| Mean | Stdev |
8_H21-29_O2-8 | 1.900 | 0.124 |
| Mean | Stdev |
8_O6-29_H41-8 | 1.961 | 0.156 |
| Mean | Stdev |
9_H41-28_O6-9 | 1.949 | 0.151 |
| Mean | Stdev |
9_N3-28_H1-9 | 1.963 | 0.091 |
| Mean | Stdev |
9_O2-28_H21-9 | 1.900 | 0.128 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 2.9493 | 2.2740 |
1 | H1-N3_1-36 | 2.8934 | 2.1191 |
1 | H21-O2_1-36 | 3.0770 | 2.8276 |
2 | H41-O6_2-35 | 2.0694 | 0.6609 |
2 | N3-H1_2-35 | 2.0480 | 0.4741 |
2 | O2-H21_2-35 | 2.0118 | 0.5931 |
3 | H3-N1_3-34 | 1.9667 | 0.1784 |
3 | O4-H61_3-34 | 2.0474 | 0.2793 |
4 | O6-H41_4-33 | 1.9556 | 0.1510 |
4 | H1-N3_4-33 | 1.9721 | 0.0920 |
4 | H21-O2_4-33 | 1.9015 | 0.1254 |
5 | H41-O6_5-32 | 1.9511 | 0.1524 |
5 | N3-H1_5-32 | 1.9645 | 0.0904 |
5 | O2-H21_5-32 | 1.9012 | 0.1269 |
6 | O6-H41_6-31 | 1.9849 | 0.1753 |
6 | H1-N3_6-31 | 1.9736 | 0.0987 |
6 | H21-O2_6-31 | 1.8924 | 0.1235 |
7 | H3-N1_7-30 | 1.9841 | 0.1321 |
7 | O4-H61_7-30 | 2.0068 | 0.2145 |
8 | O6-H41_8-29 | 1.9611 | 0.1558 |
8 | H1-N3_8-29 | 1.9690 | 0.0937 |
8 | H21-O2_8-29 | 1.8999 | 0.1240 |
9 | H41-O6_9-28 | 1.9491 | 0.1510 |
9 | N3-H1_9-28 | 1.9628 | 0.0906 |
9 | O2-H21_9-28 | 1.9003 | 0.1282 |
10 | O6-H41_10-27 | 1.9920 | 0.1839 |
10 | H1-N3_10-27 | 1.9742 | 0.1035 |
10 | H21-O2_10-27 | 1.8899 | 0.1231 |
11 | H3-N1_11-26 | 1.9859 | 0.1261 |
11 | O4-H61_11-26 | 2.0062 | 0.2171 |
12 | O6-H41_12-25 | 1.9625 | 0.1648 |
12 | H1-N3_12-25 | 1.9729 | 0.0955 |
12 | H21-O2_12-25 | 1.9035 | 0.1276 |
13 | H41-O6_13-24 | 1.9486 | 0.1525 |
13 | N3-H1_13-24 | 1.9632 | 0.0920 |
13 | O2-H21_13-24 | 1.9020 | 0.1280 |
14 | O6-H41_14-23 | 1.9835 | 0.1706 |
14 | H1-N3_14-23 | 1.9731 | 0.0995 |
14 | H21-O2_14-23 | 1.8867 | 0.1202 |
15 | H3-N1_15-22 | 2.0028 | 0.2785 |
15 | O4-H61_15-22 | 2.0055 | 0.3340 |
16 | O6-H41_16-21 | 1.9809 | 0.1993 |
16 | H1-N3_16-21 | 1.9641 | 0.1014 |
16 | H21-O2_16-21 | 1.8854 | 0.1211 |
17 | O6-H41_17-20 | 1.9677 | 0.1620 |
17 | H1-N3_17-20 | 1.9736 | 0.0951 |
17 | H21-O2_17-20 | 1.9158 | 0.1312 |
18 | H41-O6_18-19 | 1.9937 | 0.2629 |
18 | N3-H1_18-19 | 1.9971 | 0.1445 |
18 | O2-H21_18-19 | 1.9168 | 0.1582 |