Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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8 |
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9 |
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14 |
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17 |
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18 |
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5' |
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C |
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A |
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G |
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A |
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A |
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G |
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3' |
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3' |
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G |
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T |
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T |
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T |
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5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 6.050 | 4.842 |
| Mean | Stdev |
1_H21-36_O2-1 | 5.969 | 5.285 |
| Mean | Stdev |
1_O6-36_H41-1 | 7.237 | 5.174 |
| Mean | Stdev |
10_H61-27_O4-10 | 2.038 | 0.354 |
| Mean | Stdev |
10_N1-27_H3-10 | 2.007 | 0.308 |
| Mean | Stdev |
11_H61-26_O4-11 | 2.010 | 0.192 |
| Mean | Stdev |
11_N1-26_H3-11 | 1.970 | 0.115 |
| Mean | Stdev |
12_H61-25_O4-12 | 2.027 | 0.272 |
| Mean | Stdev |
12_N1-25_H3-12 | 1.963 | 0.192 |
| Mean | Stdev |
13_H1-24_N3-13 | 1.964 | 0.092 |
| Mean | Stdev |
13_H21-24_O2-13 | 1.903 | 0.128 |
| Mean | Stdev |
13_O6-24_H41-13 | 1.974 | 0.164 |
| Mean | Stdev |
14_H61-23_O4-14 | 2.011 | 0.199 |
| Mean | Stdev |
14_N1-23_H3-14 | 1.978 | 0.121 |
| Mean | Stdev |
15_H61-22_O4-15 | 2.025 | 0.201 |
| Mean | Stdev |
15_N1-22_H3-15 | 1.964 | 0.114 |
| Mean | Stdev |
16_H61-21_O4-16 | 2.061 | 0.216 |
| Mean | Stdev |
16_N1-21_H3-16 | 1.945 | 0.108 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.970 | 0.097 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.901 | 0.125 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.969 | 0.162 |
| Mean | Stdev |
18_H41-19_O6-18 | 2.025 | 0.353 |
| Mean | Stdev |
18_N3-19_H1-18 | 2.008 | 0.203 |
| Mean | Stdev |
18_O2-19_H21-18 | 1.912 | 0.187 |
| Mean | Stdev |
2_H41-35_O6-2 | 5.467 | 3.706 |
| Mean | Stdev |
2_N3-35_H1-2 | 4.803 | 2.992 |
| Mean | Stdev |
2_O2-35_H21-2 | 4.525 | 2.795 |
| Mean | Stdev |
3_H61-34_O4-3 | 3.129 | 1.696 |
| Mean | Stdev |
3_N1-34_H3-3 | 3.028 | 1.587 |
| Mean | Stdev |
4_H61-33_O4-4 | 2.070 | 0.310 |
| Mean | Stdev |
4_N1-33_H3-4 | 2.081 | 0.334 |
| Mean | Stdev |
5_H1-32_N3-5 | 1.971 | 0.097 |
| Mean | Stdev |
5_H21-32_O2-5 | 1.908 | 0.135 |
| Mean | Stdev |
5_O6-32_H41-5 | 1.975 | 0.166 |
| Mean | Stdev |
6_H61-31_O4-6 | 2.008 | 0.189 |
| Mean | Stdev |
6_N1-31_H3-6 | 1.981 | 0.126 |
| Mean | Stdev |
7_H61-30_O4-7 | 2.009 | 0.186 |
| Mean | Stdev |
7_N1-30_H3-7 | 1.970 | 0.118 |
| Mean | Stdev |
8_H61-29_O4-8 | 2.018 | 0.190 |
| Mean | Stdev |
8_N1-29_H3-8 | 1.955 | 0.113 |
| Mean | Stdev |
9_H1-28_N3-9 | 1.963 | 0.094 |
| Mean | Stdev |
9_H21-28_O2-9 | 1.901 | 0.128 |
| Mean | Stdev |
9_O6-28_H41-9 | 1.966 | 0.162 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 7.2371 | 5.1741 |
1 | H1-N3_1-36 | 6.0503 | 4.8422 |
1 | H21-O2_1-36 | 5.9692 | 5.2854 |
2 | H41-O6_2-35 | 5.4669 | 3.7062 |
2 | N3-H1_2-35 | 4.8028 | 2.9919 |
2 | O2-H21_2-35 | 4.5248 | 2.7954 |
3 | N1-H3_3-34 | 3.0276 | 1.5870 |
3 | H61-O4_3-34 | 3.1291 | 1.6956 |
4 | N1-H3_4-33 | 2.0809 | 0.3336 |
4 | H61-O4_4-33 | 2.0698 | 0.3098 |
5 | O6-H41_5-32 | 1.9750 | 0.1656 |
5 | H1-N3_5-32 | 1.9712 | 0.0966 |
5 | H21-O2_5-32 | 1.9078 | 0.1348 |
6 | N1-H3_6-31 | 1.9809 | 0.1258 |
6 | H61-O4_6-31 | 2.0084 | 0.1886 |
7 | N1-H3_7-30 | 1.9696 | 0.1184 |
7 | H61-O4_7-30 | 2.0086 | 0.1857 |
8 | N1-H3_8-29 | 1.9548 | 0.1129 |
8 | H61-O4_8-29 | 2.0185 | 0.1896 |
9 | O6-H41_9-28 | 1.9663 | 0.1620 |
9 | H1-N3_9-28 | 1.9628 | 0.0938 |
9 | H21-O2_9-28 | 1.9008 | 0.1279 |
10 | N1-H3_10-27 | 2.0072 | 0.3077 |
10 | H61-O4_10-27 | 2.0384 | 0.3543 |
11 | N1-H3_11-26 | 1.9703 | 0.1150 |
11 | H61-O4_11-26 | 2.0100 | 0.1924 |
12 | N1-H3_12-25 | 1.9634 | 0.1924 |
12 | H61-O4_12-25 | 2.0275 | 0.2719 |
13 | O6-H41_13-24 | 1.9736 | 0.1643 |
13 | H1-N3_13-24 | 1.9642 | 0.0919 |
13 | H21-O2_13-24 | 1.9033 | 0.1282 |
14 | N1-H3_14-23 | 1.9780 | 0.1206 |
14 | H61-O4_14-23 | 2.0109 | 0.1992 |
15 | N1-H3_15-22 | 1.9644 | 0.1144 |
15 | H61-O4_15-22 | 2.0252 | 0.2011 |
16 | N1-H3_16-21 | 1.9453 | 0.1080 |
16 | H61-O4_16-21 | 2.0611 | 0.2160 |
17 | O6-H41_17-20 | 1.9686 | 0.1620 |
17 | H1-N3_17-20 | 1.9703 | 0.0970 |
17 | H21-O2_17-20 | 1.9015 | 0.1254 |
18 | H41-O6_18-19 | 2.0251 | 0.3527 |
18 | N3-H1_18-19 | 2.0083 | 0.2025 |
18 | O2-H21_18-19 | 1.9119 | 0.1874 |