Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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A |
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C |
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G |
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A |
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A |
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C |
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G |
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A |
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A |
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C |
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G |
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A |
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A |
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C |
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G |
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C |
3' |
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x |
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x |
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x |
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3' |
C |
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G |
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T |
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G |
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C |
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T |
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T |
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G |
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C |
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T |
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T |
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G |
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C |
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T |
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T |
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G |
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C |
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G |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.041 | 0.411 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.953 | 0.411 |
| Mean | Stdev |
1_O6-36_H41-1 | 2.068 | 0.608 |
| Mean | Stdev |
10_H61-27_O4-10 | 1.990 | 0.184 |
| Mean | Stdev |
10_N1-27_H3-10 | 1.983 | 0.124 |
| Mean | Stdev |
11_H61-26_O4-11 | 1.995 | 0.184 |
| Mean | Stdev |
11_N1-26_H3-11 | 1.975 | 0.119 |
| Mean | Stdev |
12_H41-25_O6-12 | 2.006 | 0.197 |
| Mean | Stdev |
12_N3-25_H1-12 | 1.983 | 0.105 |
| Mean | Stdev |
12_O2-25_H21-12 | 1.892 | 0.122 |
| Mean | Stdev |
13_H1-24_N3-13 | 1.970 | 0.095 |
| Mean | Stdev |
13_H21-24_O2-13 | 1.896 | 0.128 |
| Mean | Stdev |
13_O6-24_H41-13 | 1.969 | 0.168 |
| Mean | Stdev |
14_H61-23_O4-14 | 1.983 | 0.181 |
| Mean | Stdev |
14_N1-23_H3-14 | 1.988 | 0.127 |
| Mean | Stdev |
15_H61-22_O4-15 | 2.021 | 0.210 |
| Mean | Stdev |
15_N1-22_H3-15 | 1.971 | 0.116 |
| Mean | Stdev |
16_H41-21_O6-16 | 2.000 | 0.197 |
| Mean | Stdev |
16_N3-21_H1-16 | 1.960 | 0.103 |
| Mean | Stdev |
16_O2-21_H21-16 | 1.892 | 0.128 |
| Mean | Stdev |
17_H1-20_N3-17 | 2.359 | 0.667 |
| Mean | Stdev |
17_H21-20_O2-17 | 2.145 | 0.665 |
| Mean | Stdev |
17_O6-20_H41-17 | 2.896 | 1.296 |
| Mean | Stdev |
18_H41-19_O6-18 | 8.478 | 5.602 |
| Mean | Stdev |
18_N3-19_H1-18 | 8.595 | 5.781 |
| Mean | Stdev |
18_O2-19_H21-18 | 9.642 | 6.527 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.981 | 0.254 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.984 | 0.157 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.916 | 0.224 |
| Mean | Stdev |
3_H61-34_O4-3 | 1.996 | 0.193 |
| Mean | Stdev |
3_N1-34_H3-3 | 1.975 | 0.120 |
| Mean | Stdev |
4_H41-33_O6-4 | 1.985 | 0.174 |
| Mean | Stdev |
4_N3-33_H1-4 | 1.980 | 0.100 |
| Mean | Stdev |
4_O2-33_H21-4 | 1.891 | 0.122 |
| Mean | Stdev |
5_H1-32_N3-5 | 1.970 | 0.096 |
| Mean | Stdev |
5_H21-32_O2-5 | 1.905 | 0.130 |
| Mean | Stdev |
5_O6-32_H41-5 | 1.970 | 0.173 |
| Mean | Stdev |
6_H61-31_O4-6 | 2.002 | 0.227 |
| Mean | Stdev |
6_N1-31_H3-6 | 1.986 | 0.153 |
| Mean | Stdev |
7_H61-30_O4-7 | 1.996 | 0.192 |
| Mean | Stdev |
7_N1-30_H3-7 | 1.975 | 0.120 |
| Mean | Stdev |
8_H41-29_O6-8 | 2.007 | 0.200 |
| Mean | Stdev |
8_N3-29_H1-8 | 1.982 | 0.105 |
| Mean | Stdev |
8_O2-29_H21-8 | 1.891 | 0.120 |
| Mean | Stdev |
9_H1-28_N3-9 | 1.970 | 0.096 |
| Mean | Stdev |
9_H21-28_O2-9 | 1.894 | 0.124 |
| Mean | Stdev |
9_O6-28_H41-9 | 1.970 | 0.172 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 2.0679 | 0.6081 |
1 | H1-N3_1-36 | 2.0410 | 0.4108 |
1 | H21-O2_1-36 | 1.9531 | 0.4115 |
2 | H41-O6_2-35 | 1.9812 | 0.2538 |
2 | N3-H1_2-35 | 1.9835 | 0.1572 |
2 | O2-H21_2-35 | 1.9156 | 0.2242 |
3 | N1-H3_3-34 | 1.9751 | 0.1196 |
3 | H61-O4_3-34 | 1.9962 | 0.1933 |
4 | H41-O6_4-33 | 1.9850 | 0.1742 |
4 | N3-H1_4-33 | 1.9805 | 0.1004 |
4 | O2-H21_4-33 | 1.8907 | 0.1222 |
5 | O6-H41_5-32 | 1.9698 | 0.1731 |
5 | H1-N3_5-32 | 1.9698 | 0.0958 |
5 | H21-O2_5-32 | 1.9054 | 0.1298 |
6 | N1-H3_6-31 | 1.9861 | 0.1533 |
6 | H61-O4_6-31 | 2.0017 | 0.2274 |
7 | N1-H3_7-30 | 1.9749 | 0.1203 |
7 | H61-O4_7-30 | 1.9963 | 0.1917 |
8 | H41-O6_8-29 | 2.0071 | 0.1996 |
8 | N3-H1_8-29 | 1.9825 | 0.1050 |
8 | O2-H21_8-29 | 1.8906 | 0.1202 |
9 | O6-H41_9-28 | 1.9702 | 0.1723 |
9 | H1-N3_9-28 | 1.9701 | 0.0957 |
9 | H21-O2_9-28 | 1.8938 | 0.1241 |
10 | N1-H3_10-27 | 1.9829 | 0.1239 |
10 | H61-O4_10-27 | 1.9898 | 0.1839 |
11 | N1-H3_11-26 | 1.9746 | 0.1193 |
11 | H61-O4_11-26 | 1.9953 | 0.1836 |
12 | H41-O6_12-25 | 2.0056 | 0.1969 |
12 | N3-H1_12-25 | 1.9826 | 0.1052 |
12 | O2-H21_12-25 | 1.8918 | 0.1218 |
13 | O6-H41_13-24 | 1.9688 | 0.1677 |
13 | H1-N3_13-24 | 1.9702 | 0.0947 |
13 | H21-O2_13-24 | 1.8962 | 0.1278 |
14 | N1-H3_14-23 | 1.9877 | 0.1273 |
14 | H61-O4_14-23 | 1.9830 | 0.1814 |
15 | N1-H3_15-22 | 1.9710 | 0.1160 |
15 | H61-O4_15-22 | 2.0212 | 0.2100 |
16 | H41-O6_16-21 | 1.9999 | 0.1973 |
16 | N3-H1_16-21 | 1.9601 | 0.1026 |
16 | O2-H21_16-21 | 1.8916 | 0.1278 |
17 | O6-H41_17-20 | 2.8961 | 1.2964 |
17 | H1-N3_17-20 | 2.3589 | 0.6671 |
17 | H21-O2_17-20 | 2.1449 | 0.6650 |
18 | H41-O6_18-19 | 8.4778 | 5.6017 |
18 | N3-H1_18-19 | 8.5949 | 5.7814 |
18 | O2-H21_18-19 | 9.6420 | 6.5271 |