Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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G |
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A |
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G |
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G |
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G |
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A |
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G |
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G |
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G |
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A |
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G |
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G |
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G |
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A |
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G |
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C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
C |
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G |
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C |
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T |
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C |
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C |
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C |
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T |
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C |
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C |
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C |
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T |
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C |
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C |
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C |
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T |
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C |
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G |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 7.504 | 4.522 |
| Mean | Stdev |
1_H21-36_O2-1 | 8.236 | 5.193 |
| Mean | Stdev |
1_O6-36_H41-1 | 7.801 | 4.681 |
| Mean | Stdev |
10_H1-27_N3-10 | 1.966 | 0.096 |
| Mean | Stdev |
10_H21-27_O2-10 | 1.895 | 0.125 |
| Mean | Stdev |
10_O6-27_H41-10 | 1.951 | 0.169 |
| Mean | Stdev |
11_H1-26_N3-11 | 1.975 | 0.092 |
| Mean | Stdev |
11_H21-26_O2-11 | 1.907 | 0.130 |
| Mean | Stdev |
11_O6-26_H41-11 | 1.960 | 0.153 |
| Mean | Stdev |
12_H61-25_O4-12 | 2.010 | 0.208 |
| Mean | Stdev |
12_N1-25_H3-12 | 1.976 | 0.125 |
| Mean | Stdev |
13_H1-24_N3-13 | 1.963 | 0.090 |
| Mean | Stdev |
13_H21-24_O2-13 | 1.894 | 0.122 |
| Mean | Stdev |
13_O6-24_H41-13 | 1.954 | 0.161 |
| Mean | Stdev |
14_H1-23_N3-14 | 1.968 | 0.104 |
| Mean | Stdev |
14_H21-23_O2-14 | 1.896 | 0.128 |
| Mean | Stdev |
14_O6-23_H41-14 | 1.968 | 0.200 |
| Mean | Stdev |
15_H1-22_N3-15 | 1.970 | 0.093 |
| Mean | Stdev |
15_H21-22_O2-15 | 1.916 | 0.136 |
| Mean | Stdev |
15_O6-22_H41-15 | 1.962 | 0.159 |
| Mean | Stdev |
16_H61-21_O4-16 | 2.029 | 0.217 |
| Mean | Stdev |
16_N1-21_H3-16 | 1.959 | 0.117 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.970 | 0.094 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.901 | 0.130 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.967 | 0.154 |
| Mean | Stdev |
18_H41-19_O6-18 | 2.005 | 0.256 |
| Mean | Stdev |
18_N3-19_H1-18 | 1.999 | 0.129 |
| Mean | Stdev |
18_O2-19_H21-18 | 1.911 | 0.142 |
| Mean | Stdev |
2_H41-35_O6-2 | 2.164 | 0.697 |
| Mean | Stdev |
2_N3-35_H1-2 | 2.049 | 0.304 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.936 | 0.246 |
| Mean | Stdev |
3_H1-34_N3-3 | 1.976 | 0.100 |
| Mean | Stdev |
3_H21-34_O2-3 | 1.893 | 0.129 |
| Mean | Stdev |
3_O6-34_H41-3 | 1.972 | 0.173 |
| Mean | Stdev |
4_H61-33_O4-4 | 1.996 | 0.201 |
| Mean | Stdev |
4_N1-33_H3-4 | 1.979 | 0.127 |
| Mean | Stdev |
5_H1-32_N3-5 | 1.959 | 0.091 |
| Mean | Stdev |
5_H21-32_O2-5 | 1.894 | 0.127 |
| Mean | Stdev |
5_O6-32_H41-5 | 1.966 | 0.165 |
| Mean | Stdev |
6_H1-31_N3-6 | 1.962 | 0.103 |
| Mean | Stdev |
6_H21-31_O2-6 | 1.894 | 0.124 |
| Mean | Stdev |
6_O6-31_H41-6 | 1.962 | 0.193 |
| Mean | Stdev |
7_H1-30_N3-7 | 1.973 | 0.098 |
| Mean | Stdev |
7_H21-30_O2-7 | 1.909 | 0.130 |
| Mean | Stdev |
7_O6-30_H41-7 | 1.957 | 0.158 |
| Mean | Stdev |
8_H61-29_O4-8 | 2.006 | 0.196 |
| Mean | Stdev |
8_N1-29_H3-8 | 1.976 | 0.122 |
| Mean | Stdev |
9_H1-28_N3-9 | 1.962 | 0.093 |
| Mean | Stdev |
9_H21-28_O2-9 | 1.891 | 0.120 |
| Mean | Stdev |
9_O6-28_H41-9 | 1.955 | 0.155 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 7.8008 | 4.6808 |
1 | H1-N3_1-36 | 7.5044 | 4.5216 |
1 | H21-O2_1-36 | 8.2365 | 5.1933 |
2 | H41-O6_2-35 | 2.1641 | 0.6970 |
2 | N3-H1_2-35 | 2.0488 | 0.3039 |
2 | O2-H21_2-35 | 1.9362 | 0.2456 |
3 | O6-H41_3-34 | 1.9721 | 0.1727 |
3 | H1-N3_3-34 | 1.9757 | 0.0996 |
3 | H21-O2_3-34 | 1.8934 | 0.1294 |
4 | N1-H3_4-33 | 1.9790 | 0.1267 |
4 | H61-O4_4-33 | 1.9962 | 0.2009 |
5 | O6-H41_5-32 | 1.9661 | 0.1654 |
5 | H1-N3_5-32 | 1.9588 | 0.0908 |
5 | H21-O2_5-32 | 1.8943 | 0.1265 |
6 | O6-H41_6-31 | 1.9623 | 0.1932 |
6 | H1-N3_6-31 | 1.9625 | 0.1031 |
6 | H21-O2_6-31 | 1.8940 | 0.1236 |
7 | O6-H41_7-30 | 1.9568 | 0.1575 |
7 | H1-N3_7-30 | 1.9729 | 0.0980 |
7 | H21-O2_7-30 | 1.9086 | 0.1295 |
8 | N1-H3_8-29 | 1.9755 | 0.1225 |
8 | H61-O4_8-29 | 2.0064 | 0.1964 |
9 | O6-H41_9-28 | 1.9552 | 0.1554 |
9 | H1-N3_9-28 | 1.9621 | 0.0932 |
9 | H21-O2_9-28 | 1.8905 | 0.1200 |
10 | O6-H41_10-27 | 1.9508 | 0.1690 |
10 | H1-N3_10-27 | 1.9656 | 0.0960 |
10 | H21-O2_10-27 | 1.8955 | 0.1253 |
11 | O6-H41_11-26 | 1.9597 | 0.1533 |
11 | H1-N3_11-26 | 1.9749 | 0.0925 |
11 | H21-O2_11-26 | 1.9068 | 0.1301 |
12 | N1-H3_12-25 | 1.9755 | 0.1251 |
12 | H61-O4_12-25 | 2.0104 | 0.2081 |
13 | O6-H41_13-24 | 1.9543 | 0.1614 |
13 | H1-N3_13-24 | 1.9626 | 0.0905 |
13 | H21-O2_13-24 | 1.8941 | 0.1224 |
14 | O6-H41_14-23 | 1.9676 | 0.1999 |
14 | H1-N3_14-23 | 1.9678 | 0.1038 |
14 | H21-O2_14-23 | 1.8957 | 0.1278 |
15 | O6-H41_15-22 | 1.9615 | 0.1588 |
15 | H1-N3_15-22 | 1.9698 | 0.0935 |
15 | H21-O2_15-22 | 1.9161 | 0.1355 |
16 | N1-H3_16-21 | 1.9592 | 0.1165 |
16 | H61-O4_16-21 | 2.0288 | 0.2171 |
17 | O6-H41_17-20 | 1.9667 | 0.1540 |
17 | H1-N3_17-20 | 1.9703 | 0.0941 |
17 | H21-O2_17-20 | 1.9014 | 0.1296 |
18 | H41-O6_18-19 | 2.0049 | 0.2559 |
18 | N3-H1_18-19 | 1.9992 | 0.1286 |
18 | O2-H21_18-19 | 1.9115 | 0.1422 |