Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
- |
C |
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G |
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C |
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G |
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G |
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G |
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C |
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G |
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G |
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G |
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C |
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G |
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G |
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G |
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C |
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G |
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C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
C |
- |
G |
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C |
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G |
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C |
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C |
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C |
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G |
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C |
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C |
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C |
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G |
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C |
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C |
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C |
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G |
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C |
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G |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
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| Mean | Stdev |
1_H1-36_N3-1 | 7.981 | 5.107 |
| Mean | Stdev |
1_H21-36_O2-1 | 8.664 | 5.665 |
| Mean | Stdev |
1_O6-36_H41-1 | 8.131 | 5.259 |
| Mean | Stdev |
10_H1-27_N3-10 | 1.956 | 0.097 |
| Mean | Stdev |
10_H21-27_O2-10 | 1.905 | 0.127 |
| Mean | Stdev |
10_O6-27_H41-10 | 1.976 | 0.187 |
| Mean | Stdev |
11_H1-26_N3-11 | 1.959 | 0.091 |
| Mean | Stdev |
11_H21-26_O2-11 | 1.902 | 0.128 |
| Mean | Stdev |
11_O6-26_H41-11 | 1.947 | 0.153 |
| Mean | Stdev |
12_H41-25_O6-12 | 1.968 | 0.168 |
| Mean | Stdev |
12_N3-25_H1-12 | 1.973 | 0.094 |
| Mean | Stdev |
12_O2-25_H21-12 | 1.898 | 0.122 |
| Mean | Stdev |
13_H1-24_N3-13 | 1.966 | 0.091 |
| Mean | Stdev |
13_H21-24_O2-13 | 1.881 | 0.119 |
| Mean | Stdev |
13_O6-24_H41-13 | 1.973 | 0.167 |
| Mean | Stdev |
14_H1-23_N3-14 | 1.959 | 0.092 |
| Mean | Stdev |
14_H21-23_O2-14 | 1.905 | 0.131 |
| Mean | Stdev |
14_O6-23_H41-14 | 1.973 | 0.171 |
| Mean | Stdev |
15_H1-22_N3-15 | 1.959 | 0.092 |
| Mean | Stdev |
15_H21-22_O2-15 | 1.907 | 0.127 |
| Mean | Stdev |
15_O6-22_H41-15 | 1.954 | 0.156 |
| Mean | Stdev |
16_H41-21_O6-16 | 1.967 | 0.171 |
| Mean | Stdev |
16_N3-21_H1-16 | 1.963 | 0.095 |
| Mean | Stdev |
16_O2-21_H21-16 | 1.896 | 0.123 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.975 | 0.096 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.904 | 0.126 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.955 | 0.154 |
| Mean | Stdev |
18_H41-19_O6-18 | 1.996 | 0.293 |
| Mean | Stdev |
18_N3-19_H1-18 | 2.002 | 0.152 |
| Mean | Stdev |
18_O2-19_H21-18 | 1.921 | 0.151 |
| Mean | Stdev |
2_H41-35_O6-2 | 2.752 | 1.373 |
| Mean | Stdev |
2_N3-35_H1-2 | 2.359 | 0.842 |
| Mean | Stdev |
2_O2-35_H21-2 | 2.192 | 0.898 |
| Mean | Stdev |
3_H1-34_N3-3 | 1.966 | 0.091 |
| Mean | Stdev |
3_H21-34_O2-3 | 1.904 | 0.131 |
| Mean | Stdev |
3_O6-34_H41-3 | 1.956 | 0.155 |
| Mean | Stdev |
4_H41-33_O6-4 | 1.963 | 0.160 |
| Mean | Stdev |
4_N3-33_H1-4 | 1.972 | 0.093 |
| Mean | Stdev |
4_O2-33_H21-4 | 1.898 | 0.122 |
| Mean | Stdev |
5_H1-32_N3-5 | 1.968 | 0.096 |
| Mean | Stdev |
5_H21-32_O2-5 | 1.884 | 0.117 |
| Mean | Stdev |
5_O6-32_H41-5 | 1.975 | 0.176 |
| Mean | Stdev |
6_H1-31_N3-6 | 1.956 | 0.093 |
| Mean | Stdev |
6_H21-31_O2-6 | 1.905 | 0.127 |
| Mean | Stdev |
6_O6-31_H41-6 | 1.971 | 0.179 |
| Mean | Stdev |
7_H1-30_N3-7 | 1.963 | 0.096 |
| Mean | Stdev |
7_H21-30_O2-7 | 1.904 | 0.128 |
| Mean | Stdev |
7_O6-30_H41-7 | 1.947 | 0.157 |
| Mean | Stdev |
8_H41-29_O6-8 | 1.961 | 0.163 |
| Mean | Stdev |
8_N3-29_H1-8 | 1.969 | 0.091 |
| Mean | Stdev |
8_O2-29_H21-8 | 1.898 | 0.123 |
| Mean | Stdev |
9_H1-28_N3-9 | 1.967 | 0.094 |
| Mean | Stdev |
9_H21-28_O2-9 | 1.882 | 0.119 |
| Mean | Stdev |
9_O6-28_H41-9 | 1.978 | 0.172 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 8.1313 | 5.2586 |
1 | H1-N3_1-36 | 7.9805 | 5.1071 |
1 | H21-O2_1-36 | 8.6635 | 5.6651 |
2 | H41-O6_2-35 | 2.7515 | 1.3735 |
2 | N3-H1_2-35 | 2.3590 | 0.8415 |
2 | O2-H21_2-35 | 2.1917 | 0.8976 |
3 | O6-H41_3-34 | 1.9557 | 0.1549 |
3 | H1-N3_3-34 | 1.9663 | 0.0915 |
3 | H21-O2_3-34 | 1.9041 | 0.1306 |
4 | H41-O6_4-33 | 1.9627 | 0.1600 |
4 | N3-H1_4-33 | 1.9718 | 0.0927 |
4 | O2-H21_4-33 | 1.8979 | 0.1217 |
5 | O6-H41_5-32 | 1.9749 | 0.1761 |
5 | H1-N3_5-32 | 1.9681 | 0.0955 |
5 | H21-O2_5-32 | 1.8842 | 0.1169 |
6 | O6-H41_6-31 | 1.9712 | 0.1794 |
6 | H1-N3_6-31 | 1.9559 | 0.0934 |
6 | H21-O2_6-31 | 1.9055 | 0.1271 |
7 | O6-H41_7-30 | 1.9473 | 0.1565 |
7 | H1-N3_7-30 | 1.9634 | 0.0960 |
7 | H21-O2_7-30 | 1.9039 | 0.1282 |
8 | H41-O6_8-29 | 1.9606 | 0.1634 |
8 | N3-H1_8-29 | 1.9688 | 0.0911 |
8 | O2-H21_8-29 | 1.8980 | 0.1230 |
9 | O6-H41_9-28 | 1.9783 | 0.1719 |
9 | H1-N3_9-28 | 1.9674 | 0.0936 |
9 | H21-O2_9-28 | 1.8818 | 0.1186 |
10 | O6-H41_10-27 | 1.9762 | 0.1868 |
10 | H1-N3_10-27 | 1.9562 | 0.0968 |
10 | H21-O2_10-27 | 1.9045 | 0.1274 |
11 | O6-H41_11-26 | 1.9469 | 0.1529 |
11 | H1-N3_11-26 | 1.9586 | 0.0906 |
11 | H21-O2_11-26 | 1.9022 | 0.1276 |
12 | H41-O6_12-25 | 1.9680 | 0.1684 |
12 | N3-H1_12-25 | 1.9732 | 0.0937 |
12 | O2-H21_12-25 | 1.8976 | 0.1224 |
13 | O6-H41_13-24 | 1.9732 | 0.1670 |
13 | H1-N3_13-24 | 1.9655 | 0.0915 |
13 | H21-O2_13-24 | 1.8813 | 0.1190 |
14 | O6-H41_14-23 | 1.9729 | 0.1710 |
14 | H1-N3_14-23 | 1.9593 | 0.0925 |
14 | H21-O2_14-23 | 1.9050 | 0.1305 |
15 | O6-H41_15-22 | 1.9538 | 0.1561 |
15 | H1-N3_15-22 | 1.9590 | 0.0924 |
15 | H21-O2_15-22 | 1.9073 | 0.1272 |
16 | H41-O6_16-21 | 1.9668 | 0.1711 |
16 | N3-H1_16-21 | 1.9628 | 0.0949 |
16 | O2-H21_16-21 | 1.8956 | 0.1233 |
17 | O6-H41_17-20 | 1.9554 | 0.1542 |
17 | H1-N3_17-20 | 1.9750 | 0.0957 |
17 | H21-O2_17-20 | 1.9037 | 0.1258 |
18 | H41-O6_18-19 | 1.9957 | 0.2931 |
18 | N3-H1_18-19 | 2.0024 | 0.1523 |
18 | O2-H21_18-19 | 1.9213 | 0.1508 |