Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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G |
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A |
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T |
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C |
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G |
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T |
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C |
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G |
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A |
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C |
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G |
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A |
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G |
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C |
3' |
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3' |
C |
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G |
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C |
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T |
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A |
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G |
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C |
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T |
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A |
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G |
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5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.095 | 0.707 |
| Mean | Stdev |
1_H21-36_O2-1 | 2.023 | 0.735 |
| Mean | Stdev |
1_O6-36_H41-1 | 2.080 | 0.778 |
| Mean | Stdev |
10_H41-27_O6-10 | 1.961 | 0.161 |
| Mean | Stdev |
10_N3-27_H1-10 | 1.964 | 0.093 |
| Mean | Stdev |
10_O2-27_H21-10 | 1.891 | 0.124 |
| Mean | Stdev |
11_H1-26_N3-11 | 1.963 | 0.090 |
| Mean | Stdev |
11_H21-26_O2-11 | 1.886 | 0.122 |
| Mean | Stdev |
11_O6-26_H41-11 | 1.967 | 0.161 |
| Mean | Stdev |
12_H61-25_O4-12 | 1.973 | 0.172 |
| Mean | Stdev |
12_N1-25_H3-12 | 2.003 | 0.128 |
| Mean | Stdev |
13_H3-24_N1-13 | 2.011 | 0.137 |
| Mean | Stdev |
13_O4-24_H61-13 | 1.969 | 0.165 |
| Mean | Stdev |
14_H41-23_O6-14 | 1.968 | 0.160 |
| Mean | Stdev |
14_N3-23_H1-14 | 1.968 | 0.092 |
| Mean | Stdev |
14_O2-23_H21-14 | 1.888 | 0.123 |
| Mean | Stdev |
15_H1-22_N3-15 | 1.968 | 0.091 |
| Mean | Stdev |
15_H21-22_O2-15 | 1.892 | 0.121 |
| Mean | Stdev |
15_O6-22_H41-15 | 1.963 | 0.156 |
| Mean | Stdev |
16_H61-21_O4-16 | 1.985 | 0.185 |
| Mean | Stdev |
16_N1-21_H3-16 | 1.976 | 0.121 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.962 | 0.091 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.896 | 0.124 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.966 | 0.158 |
| Mean | Stdev |
18_H41-19_O6-18 | 2.014 | 0.344 |
| Mean | Stdev |
18_N3-19_H1-18 | 2.012 | 0.213 |
| Mean | Stdev |
18_O2-19_H21-18 | 1.921 | 0.197 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.949 | 0.149 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.970 | 0.091 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.891 | 0.119 |
| Mean | Stdev |
3_H1-34_N3-3 | 1.958 | 0.089 |
| Mean | Stdev |
3_H21-34_O2-3 | 1.888 | 0.124 |
| Mean | Stdev |
3_O6-34_H41-3 | 1.958 | 0.153 |
| Mean | Stdev |
4_H61-33_O4-4 | 1.980 | 0.168 |
| Mean | Stdev |
4_N1-33_H3-4 | 2.000 | 0.126 |
| Mean | Stdev |
5_H3-32_N1-5 | 2.002 | 0.130 |
| Mean | Stdev |
5_O4-32_H61-5 | 1.982 | 0.171 |
| Mean | Stdev |
6_H41-31_O6-6 | 1.966 | 0.166 |
| Mean | Stdev |
6_N3-31_H1-6 | 1.965 | 0.095 |
| Mean | Stdev |
6_O2-31_H21-6 | 1.890 | 0.124 |
| Mean | Stdev |
7_H1-30_N3-7 | 1.964 | 0.090 |
| Mean | Stdev |
7_H21-30_O2-7 | 1.893 | 0.126 |
| Mean | Stdev |
7_O6-30_H41-7 | 1.966 | 0.158 |
| Mean | Stdev |
8_H61-29_O4-8 | 1.982 | 0.175 |
| Mean | Stdev |
8_N1-29_H3-8 | 2.001 | 0.131 |
| Mean | Stdev |
9_H3-28_N1-9 | 1.999 | 0.130 |
| Mean | Stdev |
9_O4-28_H61-9 | 1.987 | 0.178 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 2.0796 | 0.7785 |
1 | H1-N3_1-36 | 2.0947 | 0.7069 |
1 | H21-O2_1-36 | 2.0227 | 0.7354 |
2 | H41-O6_2-35 | 1.9488 | 0.1494 |
2 | N3-H1_2-35 | 1.9701 | 0.0909 |
2 | O2-H21_2-35 | 1.8908 | 0.1188 |
3 | O6-H41_3-34 | 1.9579 | 0.1526 |
3 | H1-N3_3-34 | 1.9575 | 0.0892 |
3 | H21-O2_3-34 | 1.8876 | 0.1243 |
4 | N1-H3_4-33 | 1.9995 | 0.1260 |
4 | H61-O4_4-33 | 1.9800 | 0.1683 |
5 | H3-N1_5-32 | 2.0018 | 0.1299 |
5 | O4-H61_5-32 | 1.9816 | 0.1711 |
6 | H41-O6_6-31 | 1.9657 | 0.1660 |
6 | N3-H1_6-31 | 1.9648 | 0.0947 |
6 | O2-H21_6-31 | 1.8899 | 0.1241 |
7 | O6-H41_7-30 | 1.9657 | 0.1576 |
7 | H1-N3_7-30 | 1.9645 | 0.0903 |
7 | H21-O2_7-30 | 1.8929 | 0.1261 |
8 | N1-H3_8-29 | 2.0010 | 0.1310 |
8 | H61-O4_8-29 | 1.9818 | 0.1751 |
9 | H3-N1_9-28 | 1.9990 | 0.1302 |
9 | O4-H61_9-28 | 1.9867 | 0.1784 |
10 | H41-O6_10-27 | 1.9613 | 0.1610 |
10 | N3-H1_10-27 | 1.9635 | 0.0927 |
10 | O2-H21_10-27 | 1.8911 | 0.1239 |
11 | O6-H41_11-26 | 1.9668 | 0.1611 |
11 | H1-N3_11-26 | 1.9631 | 0.0903 |
11 | H21-O2_11-26 | 1.8864 | 0.1224 |
12 | N1-H3_12-25 | 2.0028 | 0.1283 |
12 | H61-O4_12-25 | 1.9732 | 0.1715 |
13 | H3-N1_13-24 | 2.0113 | 0.1365 |
13 | O4-H61_13-24 | 1.9686 | 0.1649 |
14 | H41-O6_14-23 | 1.9676 | 0.1603 |
14 | N3-H1_14-23 | 1.9678 | 0.0923 |
14 | O2-H21_14-23 | 1.8884 | 0.1227 |
15 | O6-H41_15-22 | 1.9632 | 0.1564 |
15 | H1-N3_15-22 | 1.9685 | 0.0914 |
15 | H21-O2_15-22 | 1.8923 | 0.1212 |
16 | N1-H3_16-21 | 1.9755 | 0.1212 |
16 | H61-O4_16-21 | 1.9848 | 0.1850 |
17 | O6-H41_17-20 | 1.9660 | 0.1581 |
17 | H1-N3_17-20 | 1.9623 | 0.0910 |
17 | H21-O2_17-20 | 1.8960 | 0.1237 |
18 | H41-O6_18-19 | 2.0144 | 0.3438 |
18 | N3-H1_18-19 | 2.0122 | 0.2126 |
18 | O2-H21_18-19 | 1.9209 | 0.1967 |