Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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G |
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T |
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T |
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G |
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G |
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T |
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T |
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G |
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G |
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T |
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T |
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G |
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G |
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T |
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G |
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C |
3' |
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3' |
C |
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G |
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C |
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A |
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A |
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C |
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C |
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A |
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A |
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C |
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C |
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A |
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A |
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C |
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A |
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G |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.015 | 0.301 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.928 | 0.289 |
| Mean | Stdev |
1_O6-36_H41-1 | 2.027 | 0.439 |
| Mean | Stdev |
10_H1-27_N3-10 | 1.969 | 0.097 |
| Mean | Stdev |
10_H21-27_O2-10 | 1.880 | 0.121 |
| Mean | Stdev |
10_O6-27_H41-10 | 1.985 | 0.179 |
| Mean | Stdev |
11_H1-26_N3-11 | 1.967 | 0.097 |
| Mean | Stdev |
11_H21-26_O2-11 | 1.910 | 0.130 |
| Mean | Stdev |
11_O6-26_H41-11 | 1.988 | 0.171 |
| Mean | Stdev |
12_H3-25_N1-12 | 1.975 | 0.118 |
| Mean | Stdev |
12_O4-25_H61-12 | 1.983 | 0.171 |
| Mean | Stdev |
13_H3-24_N1-13 | 1.973 | 0.120 |
| Mean | Stdev |
13_O4-24_H61-13 | 1.991 | 0.178 |
| Mean | Stdev |
14_H1-23_N3-14 | 1.973 | 0.095 |
| Mean | Stdev |
14_H21-23_O2-14 | 1.882 | 0.117 |
| Mean | Stdev |
14_O6-23_H41-14 | 1.981 | 0.165 |
| Mean | Stdev |
15_H1-22_N3-15 | 1.974 | 0.102 |
| Mean | Stdev |
15_H21-22_O2-15 | 1.907 | 0.133 |
| Mean | Stdev |
15_O6-22_H41-15 | 1.987 | 0.185 |
| Mean | Stdev |
16_H3-21_N1-16 | 1.973 | 0.125 |
| Mean | Stdev |
16_O4-21_H61-16 | 1.989 | 0.192 |
| Mean | Stdev |
17_H1-20_N3-17 | 2.084 | 0.629 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.981 | 0.574 |
| Mean | Stdev |
17_O6-20_H41-17 | 2.166 | 0.909 |
| Mean | Stdev |
18_H41-19_O6-18 | 5.130 | 4.401 |
| Mean | Stdev |
18_N3-19_H1-18 | 4.947 | 4.321 |
| Mean | Stdev |
18_O2-19_H21-18 | 5.292 | 5.032 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.957 | 0.155 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.970 | 0.094 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.892 | 0.124 |
| Mean | Stdev |
3_H1-34_N3-3 | 1.959 | 0.113 |
| Mean | Stdev |
3_H21-34_O2-3 | 1.887 | 0.128 |
| Mean | Stdev |
3_O6-34_H41-3 | 1.998 | 0.200 |
| Mean | Stdev |
4_H3-33_N1-4 | 1.984 | 0.130 |
| Mean | Stdev |
4_O4-33_H61-4 | 1.992 | 0.186 |
| Mean | Stdev |
5_H3-32_N1-5 | 1.971 | 0.137 |
| Mean | Stdev |
5_O4-32_H61-5 | 1.989 | 0.185 |
| Mean | Stdev |
6_H1-31_N3-6 | 1.974 | 0.103 |
| Mean | Stdev |
6_H21-31_O2-6 | 1.881 | 0.118 |
| Mean | Stdev |
6_O6-31_H41-6 | 1.991 | 0.197 |
| Mean | Stdev |
7_H1-30_N3-7 | 1.964 | 0.095 |
| Mean | Stdev |
7_H21-30_O2-7 | 1.905 | 0.128 |
| Mean | Stdev |
7_O6-30_H41-7 | 1.988 | 0.172 |
| Mean | Stdev |
8_H3-29_N1-8 | 1.974 | 0.118 |
| Mean | Stdev |
8_O4-29_H61-8 | 1.985 | 0.170 |
| Mean | Stdev |
9_H3-28_N1-9 | 1.973 | 0.136 |
| Mean | Stdev |
9_O4-28_H61-9 | 1.992 | 0.187 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 2.0266 | 0.4385 |
1 | H1-N3_1-36 | 2.0155 | 0.3008 |
1 | H21-O2_1-36 | 1.9282 | 0.2889 |
2 | H41-O6_2-35 | 1.9568 | 0.1549 |
2 | N3-H1_2-35 | 1.9696 | 0.0940 |
2 | O2-H21_2-35 | 1.8922 | 0.1236 |
3 | O6-H41_3-34 | 1.9976 | 0.2004 |
3 | H1-N3_3-34 | 1.9593 | 0.1134 |
3 | H21-O2_3-34 | 1.8872 | 0.1277 |
4 | H3-N1_4-33 | 1.9836 | 0.1304 |
4 | O4-H61_4-33 | 1.9922 | 0.1861 |
5 | H3-N1_5-32 | 1.9709 | 0.1368 |
5 | O4-H61_5-32 | 1.9886 | 0.1852 |
6 | O6-H41_6-31 | 1.9907 | 0.1971 |
6 | H1-N3_6-31 | 1.9737 | 0.1027 |
6 | H21-O2_6-31 | 1.8805 | 0.1184 |
7 | O6-H41_7-30 | 1.9878 | 0.1723 |
7 | H1-N3_7-30 | 1.9640 | 0.0950 |
7 | H21-O2_7-30 | 1.9053 | 0.1276 |
8 | H3-N1_8-29 | 1.9740 | 0.1178 |
8 | O4-H61_8-29 | 1.9851 | 0.1698 |
9 | H3-N1_9-28 | 1.9730 | 0.1363 |
9 | O4-H61_9-28 | 1.9923 | 0.1872 |
10 | O6-H41_10-27 | 1.9848 | 0.1790 |
10 | H1-N3_10-27 | 1.9692 | 0.0965 |
10 | H21-O2_10-27 | 1.8800 | 0.1210 |
11 | O6-H41_11-26 | 1.9881 | 0.1714 |
11 | H1-N3_11-26 | 1.9674 | 0.0967 |
11 | H21-O2_11-26 | 1.9098 | 0.1299 |
12 | H3-N1_12-25 | 1.9746 | 0.1181 |
12 | O4-H61_12-25 | 1.9834 | 0.1710 |
13 | H3-N1_13-24 | 1.9726 | 0.1203 |
13 | O4-H61_13-24 | 1.9909 | 0.1777 |
14 | O6-H41_14-23 | 1.9806 | 0.1647 |
14 | H1-N3_14-23 | 1.9730 | 0.0952 |
14 | H21-O2_14-23 | 1.8822 | 0.1171 |
15 | O6-H41_15-22 | 1.9870 | 0.1853 |
15 | H1-N3_15-22 | 1.9739 | 0.1022 |
15 | H21-O2_15-22 | 1.9072 | 0.1330 |
16 | H3-N1_16-21 | 1.9727 | 0.1247 |
16 | O4-H61_16-21 | 1.9891 | 0.1920 |
17 | O6-H41_17-20 | 2.1660 | 0.9087 |
17 | H1-N3_17-20 | 2.0836 | 0.6293 |
17 | H21-O2_17-20 | 1.9807 | 0.5743 |
18 | H41-O6_18-19 | 5.1299 | 4.4012 |
18 | N3-H1_18-19 | 4.9469 | 4.3209 |
18 | O2-H21_18-19 | 5.2919 | 5.0320 |