Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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C |
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U |
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A |
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U |
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A |
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A |
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A |
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C |
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G |
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C |
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C |
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U |
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A |
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U |
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A |
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A |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
C |
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G |
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G |
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A |
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U |
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A |
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U |
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U |
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U |
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G |
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C |
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G |
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G |
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A |
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U |
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A |
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U |
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U |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.010 | 0.167 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.927 | 0.215 |
| Mean | Stdev |
1_O6-36_H41-1 | 2.000 | 0.240 |
| Mean | Stdev |
10_H41-27_O6-10 | 2.020 | 0.276 |
| Mean | Stdev |
10_N3-27_H1-10 | 1.976 | 0.137 |
| Mean | Stdev |
10_O2-27_H21-10 | 1.882 | 0.125 |
| Mean | Stdev |
11_H1-26_N3-11 | 1.966 | 0.101 |
| Mean | Stdev |
11_H21-26_O2-11 | 1.885 | 0.120 |
| Mean | Stdev |
11_O6-26_H41-11 | 1.976 | 0.199 |
| Mean | Stdev |
12_H41-25_O6-12 | 1.984 | 0.174 |
| Mean | Stdev |
12_N3-25_H1-12 | 1.972 | 0.095 |
| Mean | Stdev |
12_O2-25_H21-12 | 1.880 | 0.116 |
| Mean | Stdev |
13_H41-24_O6-13 | 1.970 | 0.174 |
| Mean | Stdev |
13_N3-24_H1-13 | 1.966 | 0.097 |
| Mean | Stdev |
13_O2-24_H21-13 | 1.885 | 0.118 |
| Mean | Stdev |
14_H3-23_N1-14 | 1.969 | 0.118 |
| Mean | Stdev |
14_O4-23_H61-14 | 2.054 | 0.246 |
| Mean | Stdev |
15_H61-22_O4-15 | 2.146 | 0.418 |
| Mean | Stdev |
15_N1-22_H3-15 | 2.009 | 0.355 |
| Mean | Stdev |
16_H3-21_N1-16 | 1.982 | 0.130 |
| Mean | Stdev |
16_O4-21_H61-16 | 2.103 | 0.265 |
| Mean | Stdev |
17_H61-20_O4-17 | 2.080 | 0.257 |
| Mean | Stdev |
17_N1-20_H3-17 | 1.978 | 0.126 |
| Mean | Stdev |
18_H61-19_O4-18 | 2.279 | 1.152 |
| Mean | Stdev |
18_N1-19_H3-18 | 2.272 | 1.089 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.982 | 0.168 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.963 | 0.096 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.873 | 0.114 |
| Mean | Stdev |
3_H41-34_O6-3 | 1.972 | 0.184 |
| Mean | Stdev |
3_N3-34_H1-3 | 1.963 | 0.097 |
| Mean | Stdev |
3_O2-34_H21-3 | 1.879 | 0.117 |
| Mean | Stdev |
4_H3-33_N1-4 | 1.971 | 0.116 |
| Mean | Stdev |
4_O4-33_H61-4 | 2.061 | 0.239 |
| Mean | Stdev |
5_H61-32_O4-5 | 2.097 | 0.249 |
| Mean | Stdev |
5_N1-32_H3-5 | 1.975 | 0.121 |
| Mean | Stdev |
6_H3-31_N1-6 | 1.997 | 0.294 |
| Mean | Stdev |
6_O4-31_H61-6 | 2.113 | 0.372 |
| Mean | Stdev |
7_H61-30_O4-7 | 2.044 | 0.221 |
| Mean | Stdev |
7_N1-30_H3-7 | 1.988 | 0.127 |
| Mean | Stdev |
8_H61-29_O4-8 | 2.040 | 0.230 |
| Mean | Stdev |
8_N1-29_H3-8 | 2.002 | 0.135 |
| Mean | Stdev |
9_H61-28_O4-9 | 2.048 | 0.325 |
| Mean | Stdev |
9_N1-28_H3-9 | 2.011 | 0.187 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 1.9996 | 0.2403 |
1 | H1-N3_1-36 | 2.0099 | 0.1674 |
1 | H21-O2_1-36 | 1.9275 | 0.2151 |
2 | H41-O6_2-35 | 1.9821 | 0.1683 |
2 | N3-H1_2-35 | 1.9632 | 0.0959 |
2 | O2-H21_2-35 | 1.8725 | 0.1139 |
3 | H41-O6_3-34 | 1.9719 | 0.1842 |
3 | N3-H1_3-34 | 1.9631 | 0.0965 |
3 | O2-H21_3-34 | 1.8789 | 0.1165 |
4 | H3-N1_4-33 | 1.9710 | 0.1160 |
4 | O4-H61_4-33 | 2.0605 | 0.2387 |
5 | N1-H3_5-32 | 1.9747 | 0.1206 |
5 | H61-O4_5-32 | 2.0970 | 0.2494 |
6 | H3-N1_6-31 | 1.9967 | 0.2940 |
6 | O4-H61_6-31 | 2.1126 | 0.3722 |
7 | N1-H3_7-30 | 1.9877 | 0.1265 |
7 | H61-O4_7-30 | 2.0442 | 0.2206 |
8 | N1-H3_8-29 | 2.0021 | 0.1345 |
8 | H61-O4_8-29 | 2.0396 | 0.2299 |
9 | N1-H3_9-28 | 2.0114 | 0.1871 |
9 | H61-O4_9-28 | 2.0480 | 0.3252 |
10 | H41-O6_10-27 | 2.0196 | 0.2760 |
10 | N3-H1_10-27 | 1.9760 | 0.1370 |
10 | O2-H21_10-27 | 1.8824 | 0.1247 |
11 | O6-H41_11-26 | 1.9756 | 0.1990 |
11 | H1-N3_11-26 | 1.9660 | 0.1010 |
11 | H21-O2_11-26 | 1.8848 | 0.1197 |
12 | H41-O6_12-25 | 1.9841 | 0.1736 |
12 | N3-H1_12-25 | 1.9721 | 0.0946 |
12 | O2-H21_12-25 | 1.8800 | 0.1155 |
13 | H41-O6_13-24 | 1.9702 | 0.1744 |
13 | N3-H1_13-24 | 1.9659 | 0.0969 |
13 | O2-H21_13-24 | 1.8845 | 0.1178 |
14 | H3-N1_14-23 | 1.9690 | 0.1185 |
14 | O4-H61_14-23 | 2.0542 | 0.2461 |
15 | N1-H3_15-22 | 2.0090 | 0.3550 |
15 | H61-O4_15-22 | 2.1458 | 0.4185 |
16 | H3-N1_16-21 | 1.9819 | 0.1304 |
16 | O4-H61_16-21 | 2.1029 | 0.2654 |
17 | N1-H3_17-20 | 1.9783 | 0.1258 |
17 | H61-O4_17-20 | 2.0799 | 0.2565 |
18 | N1-H3_18-19 | 2.2723 | 1.0886 |
18 | H61-O4_18-19 | 2.2785 | 1.1521 |