Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
- |
G |
- |
C |
- |
G |
- |
C |
- |
G |
- |
C |
- |
A |
- |
C |
- |
C |
- |
A |
- |
C |
- |
G |
- |
C |
- |
G |
- |
C |
- |
G |
- |
G |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
C |
- |
C |
- |
G |
- |
C |
- |
G |
- |
C |
- |
G |
- |
U |
- |
G |
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G |
- |
U |
- |
G |
- |
C |
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G |
- |
C |
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G |
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C |
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C |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 1.998 | 0.138 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.932 | 0.221 |
| Mean | Stdev |
1_O6-36_H41-1 | 1.977 | 0.198 |
| Mean | Stdev |
10_H41-27_O6-10 | 1.963 | 0.173 |
| Mean | Stdev |
10_N3-27_H1-10 | 1.958 | 0.098 |
| Mean | Stdev |
10_O2-27_H21-10 | 1.884 | 0.121 |
| Mean | Stdev |
11_H61-26_O4-11 | 2.095 | 0.309 |
| Mean | Stdev |
11_N1-26_H3-11 | 1.988 | 0.151 |
| Mean | Stdev |
12_H41-25_O6-12 | 2.004 | 0.227 |
| Mean | Stdev |
12_N3-25_H1-12 | 1.968 | 0.115 |
| Mean | Stdev |
12_O2-25_H21-12 | 1.887 | 0.124 |
| Mean | Stdev |
13_H1-24_N3-13 | 1.968 | 0.113 |
| Mean | Stdev |
13_H21-24_O2-13 | 1.885 | 0.122 |
| Mean | Stdev |
13_O6-24_H41-13 | 1.993 | 0.222 |
| Mean | Stdev |
14_H41-23_O6-14 | 2.009 | 0.243 |
| Mean | Stdev |
14_N3-23_H1-14 | 1.974 | 0.120 |
| Mean | Stdev |
14_O2-23_H21-14 | 1.889 | 0.121 |
| Mean | Stdev |
15_H1-22_N3-15 | 1.974 | 0.114 |
| Mean | Stdev |
15_H21-22_O2-15 | 1.890 | 0.121 |
| Mean | Stdev |
15_O6-22_H41-15 | 2.006 | 0.231 |
| Mean | Stdev |
16_H41-21_O6-16 | 2.000 | 0.219 |
| Mean | Stdev |
16_N3-21_H1-16 | 1.972 | 0.110 |
| Mean | Stdev |
16_O2-21_H21-16 | 1.889 | 0.121 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.984 | 0.263 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.898 | 0.228 |
| Mean | Stdev |
17_O6-20_H41-17 | 2.015 | 0.419 |
| Mean | Stdev |
18_H1-19_N3-18 | 1.996 | 0.158 |
| Mean | Stdev |
18_H21-19_O2-18 | 1.922 | 0.148 |
| Mean | Stdev |
18_O6-19_H41-18 | 2.041 | 0.307 |
| Mean | Stdev |
2_H1-35_N3-2 | 1.973 | 0.103 |
| Mean | Stdev |
2_H21-35_O2-2 | 1.872 | 0.114 |
| Mean | Stdev |
2_O6-35_H41-2 | 2.004 | 0.194 |
| Mean | Stdev |
3_H41-34_O6-3 | 1.987 | 0.196 |
| Mean | Stdev |
3_N3-34_H1-3 | 1.966 | 0.098 |
| Mean | Stdev |
3_O2-34_H21-3 | 1.881 | 0.118 |
| Mean | Stdev |
4_H1-33_N3-4 | 1.971 | 0.103 |
| Mean | Stdev |
4_H21-33_O2-4 | 1.889 | 0.119 |
| Mean | Stdev |
4_O6-33_H41-4 | 2.007 | 0.206 |
| Mean | Stdev |
5_H41-32_O6-5 | 2.006 | 0.219 |
| Mean | Stdev |
5_N3-32_H1-5 | 1.973 | 0.103 |
| Mean | Stdev |
5_O2-32_H21-5 | 1.891 | 0.121 |
| Mean | Stdev |
6_H1-31_N3-6 | 1.973 | 0.101 |
| Mean | Stdev |
6_H21-31_O2-6 | 1.894 | 0.121 |
| Mean | Stdev |
6_O6-31_H41-6 | 2.002 | 0.205 |
| Mean | Stdev |
7_H41-30_O6-7 | 1.988 | 0.173 |
| Mean | Stdev |
7_N3-30_H1-7 | 1.969 | 0.097 |
| Mean | Stdev |
7_O2-30_H21-7 | 1.887 | 0.117 |
| Mean | Stdev |
8_H61-29_O4-8 | 2.075 | 0.262 |
| Mean | Stdev |
8_N1-29_H3-8 | 1.980 | 0.130 |
| Mean | Stdev |
9_H41-28_O6-9 | 1.989 | 0.170 |
| Mean | Stdev |
9_N3-28_H1-9 | 1.966 | 0.093 |
| Mean | Stdev |
9_O2-28_H21-9 | 1.890 | 0.122 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 1.9773 | 0.1975 |
1 | H1-N3_1-36 | 1.9978 | 0.1382 |
1 | H21-O2_1-36 | 1.9316 | 0.2211 |
2 | O6-H41_2-35 | 2.0041 | 0.1937 |
2 | H1-N3_2-35 | 1.9726 | 0.1032 |
2 | H21-O2_2-35 | 1.8721 | 0.1144 |
3 | H41-O6_3-34 | 1.9873 | 0.1963 |
3 | N3-H1_3-34 | 1.9660 | 0.0979 |
3 | O2-H21_3-34 | 1.8812 | 0.1182 |
4 | O6-H41_4-33 | 2.0071 | 0.2065 |
4 | H1-N3_4-33 | 1.9707 | 0.1032 |
4 | H21-O2_4-33 | 1.8885 | 0.1195 |
5 | H41-O6_5-32 | 2.0065 | 0.2189 |
5 | N3-H1_5-32 | 1.9728 | 0.1029 |
5 | O2-H21_5-32 | 1.8912 | 0.1213 |
6 | O6-H41_6-31 | 2.0021 | 0.2049 |
6 | H1-N3_6-31 | 1.9726 | 0.1005 |
6 | H21-O2_6-31 | 1.8941 | 0.1212 |
7 | H41-O6_7-30 | 1.9884 | 0.1735 |
7 | N3-H1_7-30 | 1.9693 | 0.0973 |
7 | O2-H21_7-30 | 1.8872 | 0.1165 |
8 | N1-H3_8-29 | 1.9798 | 0.1298 |
8 | H61-O4_8-29 | 2.0755 | 0.2622 |
9 | H41-O6_9-28 | 1.9891 | 0.1704 |
9 | N3-H1_9-28 | 1.9660 | 0.0935 |
9 | O2-H21_9-28 | 1.8903 | 0.1216 |
10 | H41-O6_10-27 | 1.9634 | 0.1726 |
10 | N3-H1_10-27 | 1.9577 | 0.0975 |
10 | O2-H21_10-27 | 1.8843 | 0.1206 |
11 | N1-H3_11-26 | 1.9881 | 0.1506 |
11 | H61-O4_11-26 | 2.0946 | 0.3088 |
12 | H41-O6_12-25 | 2.0038 | 0.2271 |
12 | N3-H1_12-25 | 1.9684 | 0.1148 |
12 | O2-H21_12-25 | 1.8874 | 0.1245 |
13 | O6-H41_13-24 | 1.9928 | 0.2219 |
13 | H1-N3_13-24 | 1.9685 | 0.1126 |
13 | H21-O2_13-24 | 1.8850 | 0.1225 |
14 | H41-O6_14-23 | 2.0086 | 0.2432 |
14 | N3-H1_14-23 | 1.9737 | 0.1203 |
14 | O2-H21_14-23 | 1.8890 | 0.1211 |
15 | O6-H41_15-22 | 2.0061 | 0.2310 |
15 | H1-N3_15-22 | 1.9742 | 0.1142 |
15 | H21-O2_15-22 | 1.8898 | 0.1215 |
16 | H41-O6_16-21 | 1.9995 | 0.2189 |
16 | N3-H1_16-21 | 1.9718 | 0.1099 |
16 | O2-H21_16-21 | 1.8889 | 0.1212 |
17 | O6-H41_17-20 | 2.0148 | 0.4191 |
17 | H1-N3_17-20 | 1.9841 | 0.2631 |
17 | H21-O2_17-20 | 1.8979 | 0.2281 |
18 | O6-H41_18-19 | 2.0412 | 0.3066 |
18 | H1-N3_18-19 | 1.9956 | 0.1582 |
18 | H21-O2_18-19 | 1.9221 | 0.1478 |