Entry: NAFlex_MuG_TRF1


Nucleic Sequence:


SequenceTGTTAGGGTTAGGGTTAG
Rev. SequenceCTAACCCTAACCCTAACA
TypeProt-DNA
SubTypeB
Chainsduplex
Pdb 1W0T
LigandsNo


Force FieldparmBSC1
Simulated Time40 ns
Time Step1 ps
PartsDNA+ions
Temperature300K
Water ModelSPCE
Additional SolventNo
Counter IonsNa+
Ionic Concentration0.15M
Additional IonsNo
Additional MoleculesNo
Ions ParametersDang
RMSd2.531 (0.433) Å    
RMSf
Unified Molecular Modeling (UMM) Metadata
(Click to see full UMM)
AdditionalIonsNo
AdditionalMoleculesNo
AdditionalSolventNo
AuthorM.P.C.L.
Chainsduplex
CommentsA Comprehensive Model for the Recognition of Human Telomeres by TRF1
CounterIonsNa+
Formatmdcrd
FrameStep1 ps
Frames40000
IonicConcentration0.15M
IonsParametersDang
LigandsNo
NucTypeProt-DNA
PDB1w0t
PartsDNA+ions
RMSd_avg2.531
RMSd_stdev0.433
Rgyr_avg19.047
Rgyr_stdev0.396
SASA_avg6630.185
SASA_stdev110.995
SubTypeB
Temperature300K
Topologywtrep1nw.top.gz
Trajectoryrep1nwdt10.trj.gz
WaterSPCE
_idNAFlex_MuG_TRF1
datasetArray
date0.00000000 1462924800
descriptionDNA-B Duplex Complex ParmBSC0 SPC/E
forceFieldparmBSC1
ionsModel-
moleculeTypeDna
rev_sequenceCTAACCCTAACCCTAACA
saltConcentration-
sequenceTGTTAGGGTTAGGGTTAG
soluteAtoms1146
soluteCharge-35
soluteResidues36
solventAtoms-
solventResidues-
time40
totalAtoms1146
totalCharge-35
totalIons-
totalResidues36


Selection:
MDAnalysis Atom Selection Syntax
e.g. resid 2:11 or resid 13:20
Frame (start:stop:step)
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Analysis

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