Biblio
Conformationally rigid nucleoside probes help understand the role of sugar pucker and nucleobase orientation in the thrombin-binding aptamer.,
, Nucleic Acids Res, 2009 Sep, Volume 37, p.5589-601, (2009)
The use of conformationally rigid nucleoside probes to study the role of sugar pucker and nucleobase orientation in the thrombin binding aptamer.,
, Nucleic Acids Symp Ser (Oxf), 2009, p.109-10, (2009)
Differential stability of 2’F-ANA*RNA and ANA*RNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility.,
, Nucleic Acids Res, 2010 Apr, Volume 38, p.2498-511, (2010)
Multiple routes to characterize the folding of a small DNA hairpin.,
, Angew Chem Int Ed Engl, 2010 Oct 11, Volume 49, p.7673-6, (2010)
Time averaging of NMR chemical shifts in the MLF peptide in the solid state.,
, J Am Chem Soc, 2010 May 5, Volume 132, p.5993-6000, (2010)
Molecular basis of substrate-induced permeation by an amino acid antiporter.,
, Proc Natl Acad Sci U S A, 2011 Mar 8, Volume 108, p.3935-40, (2011)
Nucleotide binding switches the information flow in ras GTPases.,
, PLoS Comput Biol, 2011 Mar, Volume 7, p.e1001098, (2011)
Design of peptide-membrane interactions to modulate single-file water transport through modified gramicidin channels.,
, Biophys J, 2012 Oct 17, Volume 103, p.1698-705, (2012)
Structure of triplex DNA in the gas phase.,
, J Am Chem Soc, 2012 Apr 18, Volume 134, p.6596-606, (2012)
Backbone FC-H···O hydrogen bonds in 2’F-substituted nucleic acids.,
, Angew Chem Int Ed Engl, 2013 Nov 11, Volume 52, p.12065-8, (2013)
Dramatic effect of furanose C2’ substitution on structure and stability: directing the folding of the human telomeric quadruplex with a single fluorine atom.,
, J Am Chem Soc, 2013 Apr 10, Volume 135, p.5344-7, (2013)
Light on the structural communication in Ras GTPases.,
, J Biomol Struct Dyn, 2013, Volume 31, p.142-57, (2013)
Understanding the Connection between Epigenetic DNA Methylation and Nucleosome Positioning from Computer Simulations,
, PLoS Comput Biol, 11, Volume 9, p.e1003354, (2013)
MD and NMR analyses of choline and TMA binding to duplex DNA: on the origins of aberrant sequence-dependent stability by alkyl cations in aqueous and water-free solvents.,
, J Am Chem Soc, 2014 Feb 26, Volume 136, p.3075-86, (2014)
Specific loop modifications of the thrombin-binding aptamer trigger the formation of parallel structures.,
, FEBS J, 2014 Feb, Volume 281, p.1085-99, (2014)
Structure and properties of DNA in apolar solvents,
, J Phys Chem B, 2014 Jul 24, Volume 118, p.8540-8, (2014)
Can A Denaturant Stabilize DNA? Pyridine Reverses DNA Denaturation in Acidic pH,
, Angewandte Chemie International Edition, Volume 54, p.10488–10491, (2015)
Chromatin Unfolding by Epigenetic Modifications Explained by Dramatic Impairment of Internucleosome Interactions: A Multiscale Computational Study,
, Journal of the American Chemical Society, 2015/08/19, Volume 137, Issue 32, p.10205 - 10215, (2015)
Seven-Membered Ring Nucleoside Analogues: Stereoselective Synthesis and Studies on Their Conformational Properties,
, Organic Letters, 11/2015, Volume 17, Issue 21, p.5416 - 5419, (2015)
Structure and Dynamics of Oligonucleotides in the Gas Phase,
, Angewandte Chemie International Edition, 01/2015, Volume 54, p.467–471, (2015)
Synthesis and Properties of 2'-Deoxy-2',4'-difluoroarabinose-Modified Nucleic Acids,
, The Journal of Organic Chemistry, 2015/03/20, Volume 80, Issue 6, p.3083 - 3091, (2015)
Parmbsc1: a refined force field for DNA simulations.,
, Nat Methods, 2016 Jan, Volume 13, p.55-8, (2016)
How accurate are accurate force-fields for B-DNA?,
, Nucleic Acids Research, 01/2017, Volume 45, Issue 7, p.4217-4230, (2017)
Determination of a Structural Ensemble Representing the Dynamics of a G-Quadruplex DNA,
, Biochemistry, 12/2019, (2019)
The Origins and the Biological Consequences of the Pur/Pyr DNA·RNA Asymmetry,
, Chem, 04/2019, (2019)
Emergence of chromatin hierarchical loops from protein disorder and nucleosome asymmetry,
, Proceedings of the National Academy of Sciences, 03/2020, Volume 117, Issue 13, p.7216, (2020)
The Impact of the HydroxyMethylCytosine epigenetic signature on DNA structure and function,
, PLOS Computational Biology, 11/2021, Volume 17, Issue 11, p.e1009547 - , (2021)