htSeqTools: high-throughput sequencing quality control, processing and visualization in R.
|Title||htSeqTools: high-throughput sequencing quality control, processing and visualization in R.|
|Publication Type||Journal Article|
|Year of Publication||2012|
|Authors||Planet, Evarist, Attolini Camille Stephan- Ot, Reina Oscar, Flores Oscar, and Rossell David|
|Date Published||2012 Feb 15|
|Keywords||Genomics, High-Throughput Nucleotide Sequencing, Humans, Internet, Oligonucleotide Array Sequence Analysis, Quality Control, Saccharomyces cerevisiae, Software|
UNLABELLED: We provide a Bioconductor package with quality assessment, processing and visualization tools for high-throughput sequencing data, with emphasis in ChIP-seq and RNA-seq studies. It includes detection of outliers and biases, inefficient immuno-precipitation and overamplification artifacts, de novo identification of read-rich genomic regions and visualization of the location and coverage of genomic region lists.