Nucleic Acid Analysis - Stiffness Analysis
(Using Curves+ program)
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | |||||||||||||
| 5' | C | - | G | - | C | - | G | - | A | - | X | - | G | - | T | - | C | - | G | - | C | - | G | 3' |
| | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | ||||||
| 3' | G | - | C | - | G | - | C | - | T | - | G | - | X | - | A | - | G | - | C | - | G | - | C | 5' |
| 24 | 23 | 22 | 21 | 20 | 19 | 18 | 17 | 16 | 15 | 14 | 13 |
Interactive Sequence (see Help)
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| Shift | Slide | Rise | Tilt | Roll | Twist | |
| Shift | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Slide | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Rise | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Tilt | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Roll | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Twist | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
 |
[Image courtesy of Curves+] |
Units:
Diagonal Shift/Slide/Rise in kcal/(mol*Ų), Diagonal Tilt/Roll/Twist in kcal/(mol*degree²)
Out of Diagonal: Shift/Slide/Rise in kcal/(mol*Å), Out of Diagonal Tilt/Roll/Twist in kcal/(mol*degree)
|
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| Shift | Slide | Rise | Tilt | Roll | Twist | |
| Shift | 0.947 | 0.000 | 0.000 | -0.118 | 0.000 | 0.000 |
| Slide | 0.000 | 2.991 | 0.333 | 0.000 | 0.005 | -0.160 |
| Rise | 0.000 | 0.333 | 8.923 | 0.000 | -0.103 | -0.266 |
| Tilt | -0.118 | 0.000 | 0.000 | 0.027 | 0.000 | 0.000 |
| Roll | 0.000 | 0.005 | -0.103 | 0.000 | 0.018 | 0.008 |
| Twist | 0.000 | -0.160 | -0.266 | 0.000 | 0.008 | 0.029 |
|
[Image courtesy of Curves+] |
Units:
Diagonal Shift/Slide/Rise in kcal/(mol*Ų), Diagonal Tilt/Roll/Twist in kcal/(mol*degree²)
Out of Diagonal: Shift/Slide/Rise in kcal/(mol*Å), Out of Diagonal Tilt/Roll/Twist in kcal/(mol*degree)
|
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| Shift | Slide | Rise | Tilt | Roll | Twist | |
| Shift | 1.068 | 0.000 | 0.000 | -0.142 | 0.000 | 0.000 |
| Slide | 0.000 | 2.635 | 0.709 | 0.000 | -0.008 | -0.147 |
| Rise | 0.000 | 0.709 | 8.175 | 0.000 | -0.085 | -0.246 |
| Tilt | -0.142 | 0.000 | 0.000 | 0.030 | 0.000 | 0.000 |
| Roll | 0.000 | -0.008 | -0.085 | 0.000 | 0.017 | 0.007 |
| Twist | 0.000 | -0.147 | -0.246 | 0.000 | 0.007 | 0.029 |
|
[Image courtesy of Curves+] |
Units:
Diagonal Shift/Slide/Rise in kcal/(mol*Ų), Diagonal Tilt/Roll/Twist in kcal/(mol*degree²)
Out of Diagonal: Shift/Slide/Rise in kcal/(mol*Å), Out of Diagonal Tilt/Roll/Twist in kcal/(mol*degree)
|
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| Shift | Slide | Rise | Tilt | Roll | Twist | |
| Shift | 0.899 | 0.000 | 0.000 | -0.133 | 0.000 | 0.000 |
| Slide | 0.000 | 2.666 | 1.209 | 0.000 | -0.045 | -0.092 |
| Rise | 0.000 | 1.209 | 8.996 | 0.000 | -0.023 | -0.165 |
| Tilt | -0.133 | 0.000 | 0.000 | 0.037 | 0.000 | 0.000 |
| Roll | 0.000 | -0.045 | -0.023 | 0.000 | 0.027 | 0.012 |
| Twist | 0.000 | -0.092 | -0.165 | 0.000 | 0.012 | 0.047 |
|
[Image courtesy of Curves+] |
Units:
Diagonal Shift/Slide/Rise in kcal/(mol*Ų), Diagonal Tilt/Roll/Twist in kcal/(mol*degree²)
Out of Diagonal: Shift/Slide/Rise in kcal/(mol*Å), Out of Diagonal Tilt/Roll/Twist in kcal/(mol*degree)
|
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| Shift | Slide | Rise | Tilt | Roll | Twist | |
| Shift | 1.148 | 0.000 | 0.000 | -0.126 | 0.000 | 0.000 |
| Slide | 0.000 | 2.847 | 1.825 | 0.000 | 0.060 | -0.066 |
| Rise | 0.000 | 1.825 | 10.019 | 0.000 | 0.115 | -0.162 |
| Tilt | -0.126 | 0.000 | 0.000 | 0.042 | 0.000 | 0.000 |
| Roll | 0.000 | 0.060 | 0.115 | 0.000 | 0.026 | 0.009 |
| Twist | 0.000 | -0.066 | -0.162 | 0.000 | 0.009 | 0.035 |
|
[Image courtesy of Curves+] |
Units:
Diagonal Shift/Slide/Rise in kcal/(mol*Ų), Diagonal Tilt/Roll/Twist in kcal/(mol*degree²)
Out of Diagonal: Shift/Slide/Rise in kcal/(mol*Å), Out of Diagonal Tilt/Roll/Twist in kcal/(mol*degree)
|
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| Shift | Slide | Rise | Tilt | Roll | Twist | |
| Shift | 0.955 | 0.000 | 0.000 | -0.111 | 0.000 | 0.000 |
| Slide | 0.000 | 2.962 | 2.286 | 0.000 | 0.062 | -0.079 |
| Rise | 0.000 | 2.286 | 11.096 | 0.000 | 0.129 | -0.212 |
| Tilt | -0.111 | 0.000 | 0.000 | 0.041 | 0.000 | 0.000 |
| Roll | 0.000 | 0.062 | 0.129 | 0.000 | 0.023 | 0.002 |
| Twist | 0.000 | -0.079 | -0.212 | 0.000 | 0.002 | 0.032 |
|
[Image courtesy of Curves+] |
Units:
Diagonal Shift/Slide/Rise in kcal/(mol*Ų), Diagonal Tilt/Roll/Twist in kcal/(mol*degree²)
Out of Diagonal: Shift/Slide/Rise in kcal/(mol*Å), Out of Diagonal Tilt/Roll/Twist in kcal/(mol*degree)
|
Download Raw Data |
Open in New Window |
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| Shift | Slide | Rise | Tilt | Roll | Twist | |
| Shift | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Slide | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Rise | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Tilt | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Roll | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Twist | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
|
[Image courtesy of Curves+] |
Units:
Diagonal Shift/Slide/Rise in kcal/(mol*Ų), Diagonal Tilt/Roll/Twist in kcal/(mol*degree²)
Out of Diagonal: Shift/Slide/Rise in kcal/(mol*Å), Out of Diagonal Tilt/Roll/Twist in kcal/(mol*degree)
|
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| Shift | Slide | Rise | Tilt | Roll | Twist | |
| Shift | 0.799 | 0.000 | 0.000 | -0.113 | 0.000 | 0.000 |
| Slide | 0.000 | 2.142 | 1.352 | 0.000 | -0.040 | -0.077 |
| Rise | 0.000 | 1.352 | 8.683 | 0.000 | -0.039 | -0.160 |
| Tilt | -0.113 | 0.000 | 0.000 | 0.033 | 0.000 | 0.000 |
| Roll | 0.000 | -0.040 | -0.039 | 0.000 | 0.025 | 0.012 |
| Twist | 0.000 | -0.077 | -0.160 | 0.000 | 0.012 | 0.044 |
|
[Image courtesy of Curves+] |
Units:
Diagonal Shift/Slide/Rise in kcal/(mol*Ų), Diagonal Tilt/Roll/Twist in kcal/(mol*degree²)
Out of Diagonal: Shift/Slide/Rise in kcal/(mol*Å), Out of Diagonal Tilt/Roll/Twist in kcal/(mol*degree)
|
Download Raw Data |
Open in New Window |
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| Shift | Slide | Rise | Tilt | Roll | Twist | |
| Shift | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Slide | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Rise | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Tilt | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Roll | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Twist | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
|
[Image courtesy of Curves+] |
Units:
Diagonal Shift/Slide/Rise in kcal/(mol*Ų), Diagonal Tilt/Roll/Twist in kcal/(mol*degree²)
Out of Diagonal: Shift/Slide/Rise in kcal/(mol*Å), Out of Diagonal Tilt/Roll/Twist in kcal/(mol*degree)
|
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Open in New Window |
| Mean | Stdev | |
| -axgt.5.cte | 0.000 | 0.000 |
| Mean | Stdev | |
| -cgcg.3.cte | 0.000 | 0.000 |
| Mean | Stdev | |
| -cgcg.9.cte | 0.000 | 0.000 |
| Mean | Stdev | |
| -gatc.4.cte | 0.000 | 0.000 |
| Mean | Stdev | |
| -gcgc.10.cte | 0.000 | 0.000 |
| Mean | Stdev | |
| -gcgc.2.cte | 0.000 | 0.000 |
| Mean | Stdev | |
| -gtax.7.cte | 0.000 | 0.000 |
| Mean | Stdev | |
| -tcga.8.cte | 0.000 | 0.000 |
| Mean | Stdev | |
| -xgxg.6.cte | 0.000 | 0.000 |
| Mean | Stdev | |
| rise-10-GCGC | 3.433 | 0.274 |
| Mean | Stdev | |
| roll-10-GCGC | -1.790 | 5.432 |
| Mean | Stdev | |
| shift-10-GCGC | 0.000 | 0.872 |
| Mean | Stdev | |
| slide-10-GCGC | -0.244 | 0.499 |
| Mean | Stdev | |
| tilt-10-GCGC | 0.000 | 4.546 |
| Mean | Stdev | |
| twist-10-GCGC | 34.230 | 4.722 |
| Mean | Stdev | |
| rise-2-GCGC | 3.409 | 0.269 |
| Mean | Stdev | |
| roll-2-GCGC | -2.929 | 5.425 |
| Mean | Stdev | |
| shift-2-GCGC | 0.000 | 0.949 |
| Mean | Stdev | |
| slide-2-GCGC | -0.260 | 0.498 |
| Mean | Stdev | |
| tilt-2-GCGC | 0.000 | 4.597 |
| Mean | Stdev | |
| twist-2-GCGC | 34.078 | 4.780 |
| Mean | Stdev | |
| rise-3-CGCG | 3.128 | 0.316 |
| Mean | Stdev | |
| roll-3-CGCG | 5.954 | 6.275 |
| Mean | Stdev | |
| shift-3-CGCG | 0.000 | 1.175 |
| Mean | Stdev | |
| slide-3-CGCG | 0.266 | 0.572 |
| Mean | Stdev | |
| tilt-3-CGCG | 0.000 | 6.983 |
| Mean | Stdev | |
| twist-3-CGCG | 33.097 | 7.011 |
| Mean | Stdev | |
| rise-4-GATC | 3.333 | 0.270 |
| Mean | Stdev | |
| roll-4-GATC | 1.788 | 4.998 |
| Mean | Stdev | |
| shift-4-GATC | 0.000 | 1.183 |
| Mean | Stdev | |
| slide-4-GATC | 0.400 | 0.497 |
| Mean | Stdev | |
| tilt-4-GATC | 0.000 | 5.837 |
| Mean | Stdev | |
| twist-4-GATC | 38.355 | 3.936 |
| Mean | Stdev | |
| rise-5-AXGT | 0.000 | 0.000 |
| Mean | Stdev | |
| roll-5-AXGT | 0.000 | 0.000 |
| Mean | Stdev | |
| shift-5-AXGT | 0.000 | 0.000 |
| Mean | Stdev | |
| slide-5-AXGT | 0.000 | 0.000 |
| Mean | Stdev | |
| tilt-5-AXGT | 0.000 | 0.000 |
| Mean | Stdev | |
| twist-5-AXGT | 0.000 | 0.000 |
| Mean | Stdev | |
| rise-6-XGXG | 0.000 | 0.000 |
| Mean | Stdev | |
| roll-6-XGXG | 0.000 | 0.000 |
| Mean | Stdev | |
| shift-6-XGXG | 0.000 | 0.000 |
| Mean | Stdev | |
| slide-6-XGXG | 0.000 | 0.000 |
| Mean | Stdev | |
| tilt-6-XGXG | 0.000 | 0.000 |
| Mean | Stdev | |
| twist-6-XGXG | 0.000 | 0.000 |
| Mean | Stdev | |
| rise-7-GTAX | 0.000 | 0.000 |
| Mean | Stdev | |
| roll-7-GTAX | 0.000 | 0.000 |
| Mean | Stdev | |
| shift-7-GTAX | 0.000 | 0.000 |
| Mean | Stdev | |
| slide-7-GTAX | 0.000 | 0.000 |
| Mean | Stdev | |
| tilt-7-GTAX | 0.000 | 0.000 |
| Mean | Stdev | |
| twist-7-GTAX | 0.000 | 0.000 |
| Mean | Stdev | |
| rise-8-TCGA | 3.314 | 0.279 |
| Mean | Stdev | |
| roll-8-TCGA | 1.515 | 5.195 |
| Mean | Stdev | |
| shift-8-TCGA | 0.000 | 1.197 |
| Mean | Stdev | |
| slide-8-TCGA | 0.312 | 0.564 |
| Mean | Stdev | |
| tilt-8-TCGA | 0.000 | 5.898 |
| Mean | Stdev | |
| twist-8-TCGA | 38.031 | 4.065 |
| Mean | Stdev | |
| rise-9-CGCG | 3.191 | 0.315 |
| Mean | Stdev | |
| roll-9-CGCG | 5.492 | 6.402 |
| Mean | Stdev | |
| shift-9-CGCG | 0.000 | 1.217 |
| Mean | Stdev | |
| slide-9-CGCG | 0.280 | 0.574 |
| Mean | Stdev | |
| tilt-9-CGCG | 0.000 | 7.275 |
| Mean | Stdev | |
| twist-9-CGCG | 34.175 | 6.510 |
