| Command | Version |
|---|---|
| Ptraj, Tleap | Ambertools 1.2 |
| Vmd | 1.8.5 |
| BLAST | 2.2.17 |
| NACCESS | 2.1 |
| Stride | |
| JMol | 10.00.46 |
| Gnuplot | gnuplot 4.2 patchlevel 2 |
| Queueing system | Sun Grid Engine 6.1u2 |
| Apache | 2.2.8 |
| PHP | 5.2.4 |
| PERL | 5.8.8 |
| MySQL | 5.0.51 |
| tgatoppm, pnmcrop, pnmtopng | Netpbm 10.0 |
| convert | ImageMagick 6.3.7 |
| PCASuite | 1.1 |