Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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| 5' |
C |
- |
C |
- |
C |
- |
T |
- |
A |
- |
A |
- |
C |
- |
C |
- |
C |
- |
T |
- |
A |
- |
A |
- |
C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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| 3' |
G |
- |
G |
- |
G |
- |
A |
- |
T |
- |
T |
- |
G |
- |
G |
- |
G |
- |
A |
- |
T |
- |
T |
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G |
5' |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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16 |
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15 |
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14 |
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Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H41-26_O6-1 | 2.046 | 0.595 |
| Mean | Stdev |
| 1_N3-26_H1-1 | 2.017 | 0.442 |
| Mean | Stdev |
| 1_O2-26_H21-1 | 1.977 | 0.418 |
| Mean | Stdev |
| 10_H3-17_N1-10 | 1.976 | 0.123 |
| Mean | Stdev |
| 10_O4-17_H61-10 | 2.014 | 0.212 |
| Mean | Stdev |
| 11_H61-16_O4-11 | 2.018 | 0.193 |
| Mean | Stdev |
| 11_N1-16_H3-11 | 1.960 | 0.114 |
| Mean | Stdev |
| 12_H61-15_O4-12 | 1.993 | 0.178 |
| Mean | Stdev |
| 12_N1-15_H3-12 | 1.979 | 0.123 |
| Mean | Stdev |
| 13_H41-14_O6-13 | 2.027 | 0.263 |
| Mean | Stdev |
| 13_N3-14_H1-13 | 2.018 | 0.162 |
| Mean | Stdev |
| 13_O2-14_H21-13 | 1.912 | 0.164 |
| Mean | Stdev |
| 2_H41-25_O6-2 | 1.974 | 0.193 |
| Mean | Stdev |
| 2_N3-25_H1-2 | 1.959 | 0.098 |
| Mean | Stdev |
| 2_O2-25_H21-2 | 1.887 | 0.123 |
| Mean | Stdev |
| 3_H41-24_O6-3 | 1.983 | 0.171 |
| Mean | Stdev |
| 3_N3-24_H1-3 | 1.969 | 0.093 |
| Mean | Stdev |
| 3_O2-24_H21-3 | 1.896 | 0.127 |
| Mean | Stdev |
| 4_H3-23_N1-4 | 1.978 | 0.127 |
| Mean | Stdev |
| 4_O4-23_H61-4 | 2.013 | 0.206 |
| Mean | Stdev |
| 5_H61-22_O4-5 | 2.033 | 0.209 |
| Mean | Stdev |
| 5_N1-22_H3-5 | 1.961 | 0.123 |
| Mean | Stdev |
| 6_H61-21_O4-6 | 1.980 | 0.167 |
| Mean | Stdev |
| 6_N1-21_H3-6 | 1.973 | 0.116 |
| Mean | Stdev |
| 7_H41-20_O6-7 | 1.968 | 0.153 |
| Mean | Stdev |
| 7_N3-20_H1-7 | 1.960 | 0.093 |
| Mean | Stdev |
| 7_O2-20_H21-7 | 1.885 | 0.117 |
| Mean | Stdev |
| 8_H41-19_O6-8 | 1.961 | 0.170 |
| Mean | Stdev |
| 8_N3-19_H1-8 | 1.955 | 0.091 |
| Mean | Stdev |
| 8_O2-19_H21-8 | 1.889 | 0.122 |
| Mean | Stdev |
| 9_H41-18_O6-9 | 1.982 | 0.163 |
| Mean | Stdev |
| 9_N3-18_H1-9 | 1.968 | 0.093 |
| Mean | Stdev |
| 9_O2-18_H21-9 | 1.892 | 0.123 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | H41-O6_1-26 | 2.0459 | 0.5953 |
| 1 | N3-H1_1-26 | 2.0171 | 0.4418 |
| 1 | O2-H21_1-26 | 1.9770 | 0.4179 |
| 2 | H41-O6_2-25 | 1.9739 | 0.1931 |
| 2 | N3-H1_2-25 | 1.9590 | 0.0977 |
| 2 | O2-H21_2-25 | 1.8872 | 0.1231 |
| 3 | H41-O6_3-24 | 1.9829 | 0.1713 |
| 3 | N3-H1_3-24 | 1.9688 | 0.0928 |
| 3 | O2-H21_3-24 | 1.8962 | 0.1266 |
| 4 | H3-N1_4-23 | 1.9778 | 0.1267 |
| 4 | O4-H61_4-23 | 2.0127 | 0.2061 |
| 5 | N1-H3_5-22 | 1.9610 | 0.1235 |
| 5 | H61-O4_5-22 | 2.0330 | 0.2090 |
| 6 | N1-H3_6-21 | 1.9732 | 0.1157 |
| 6 | H61-O4_6-21 | 1.9796 | 0.1672 |
| 7 | H41-O6_7-20 | 1.9678 | 0.1526 |
| 7 | N3-H1_7-20 | 1.9600 | 0.0927 |
| 7 | O2-H21_7-20 | 1.8851 | 0.1172 |
| 8 | H41-O6_8-19 | 1.9612 | 0.1700 |
| 8 | N3-H1_8-19 | 1.9553 | 0.0912 |
| 8 | O2-H21_8-19 | 1.8893 | 0.1222 |
| 9 | H41-O6_9-18 | 1.9821 | 0.1628 |
| 9 | N3-H1_9-18 | 1.9678 | 0.0934 |
| 9 | O2-H21_9-18 | 1.8920 | 0.1226 |
| 10 | H3-N1_10-17 | 1.9764 | 0.1235 |
| 10 | O4-H61_10-17 | 2.0139 | 0.2124 |
| 11 | N1-H3_11-16 | 1.9596 | 0.1139 |
| 11 | H61-O4_11-16 | 2.0180 | 0.1926 |
| 12 | N1-H3_12-15 | 1.9786 | 0.1235 |
| 12 | H61-O4_12-15 | 1.9929 | 0.1785 |
| 13 | H41-O6_13-14 | 2.0268 | 0.2632 |
| 13 | N3-H1_13-14 | 2.0177 | 0.1621 |
| 13 | O2-H21_13-14 | 1.9117 | 0.1640 |
