Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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| 5' |
C |
- |
G |
- |
C |
- |
G |
- |
A |
- |
A |
- |
T |
- |
T |
- |
C |
- |
G |
- |
C |
- |
G |
3' |
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| |
x |
| |
x |
| |
x |
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x |
| |
x |
| |
x |
| |
x |
| |
x |
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x |
| |
x |
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x |
| |
| 3' |
G |
- |
C |
- |
G |
- |
C |
- |
T |
- |
T |
- |
A |
- |
A |
- |
G |
- |
C |
- |
G |
- |
C |
5' |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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16 |
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15 |
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14 |
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13 |
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Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H41-24_O6-1 | 2.263 | 1.049 |
| Mean | Stdev |
| 1_N3-24_H1-1 | 2.155 | 0.792 |
| Mean | Stdev |
| 1_O2-24_H21-1 | 2.090 | 0.716 |
| Mean | Stdev |
| 10_H1-15_N3-10 | 1.980 | 0.097 |
| Mean | Stdev |
| 10_H21-15_O2-10 | 1.903 | 0.129 |
| Mean | Stdev |
| 10_O6-15_H41-10 | 1.956 | 0.155 |
| Mean | Stdev |
| 11_H41-14_O6-11 | 1.954 | 0.171 |
| Mean | Stdev |
| 11_N3-14_H1-11 | 1.979 | 0.107 |
| Mean | Stdev |
| 11_O2-14_H21-11 | 1.912 | 0.155 |
| Mean | Stdev |
| 12_H1-13_N3-12 | 5.506 | 3.278 |
| Mean | Stdev |
| 12_H21-13_O2-12 | 5.473 | 3.381 |
| Mean | Stdev |
| 12_O6-13_H41-12 | 5.735 | 3.371 |
| Mean | Stdev |
| 2_H1-23_N3-2 | 1.966 | 0.091 |
| Mean | Stdev |
| 2_H21-23_O2-2 | 1.894 | 0.123 |
| Mean | Stdev |
| 2_O6-23_H41-2 | 1.934 | 0.141 |
| Mean | Stdev |
| 3_H41-22_O6-3 | 1.951 | 0.152 |
| Mean | Stdev |
| 3_N3-22_H1-3 | 1.977 | 0.093 |
| Mean | Stdev |
| 3_O2-22_H21-3 | 1.902 | 0.127 |
| Mean | Stdev |
| 4_H1-21_N3-4 | 1.969 | 0.094 |
| Mean | Stdev |
| 4_H21-21_O2-4 | 1.887 | 0.125 |
| Mean | Stdev |
| 4_O6-21_H41-4 | 1.972 | 0.164 |
| Mean | Stdev |
| 5_H61-20_O4-5 | 1.979 | 0.177 |
| Mean | Stdev |
| 5_N1-20_H3-5 | 1.992 | 0.127 |
| Mean | Stdev |
| 6_H61-19_O4-6 | 2.008 | 0.186 |
| Mean | Stdev |
| 6_N1-19_H3-6 | 1.977 | 0.118 |
| Mean | Stdev |
| 7_H3-18_N1-7 | 1.974 | 0.119 |
| Mean | Stdev |
| 7_O4-18_H61-7 | 2.004 | 0.182 |
| Mean | Stdev |
| 8_H3-17_N1-8 | 2.003 | 0.135 |
| Mean | Stdev |
| 8_O4-17_H61-8 | 1.979 | 0.181 |
| Mean | Stdev |
| 9_H41-16_O6-9 | 1.970 | 0.173 |
| Mean | Stdev |
| 9_N3-16_H1-9 | 1.966 | 0.094 |
| Mean | Stdev |
| 9_O2-16_H21-9 | 1.881 | 0.123 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | H41-O6_1-24 | 2.2634 | 1.0486 |
| 1 | N3-H1_1-24 | 2.1548 | 0.7920 |
| 1 | O2-H21_1-24 | 2.0897 | 0.7160 |
| 2 | O6-H41_2-23 | 1.9344 | 0.1415 |
| 2 | H1-N3_2-23 | 1.9661 | 0.0906 |
| 2 | H21-O2_2-23 | 1.8936 | 0.1229 |
| 3 | H41-O6_3-22 | 1.9514 | 0.1521 |
| 3 | N3-H1_3-22 | 1.9769 | 0.0926 |
| 3 | O2-H21_3-22 | 1.9017 | 0.1273 |
| 4 | O6-H41_4-21 | 1.9717 | 0.1643 |
| 4 | H1-N3_4-21 | 1.9688 | 0.0939 |
| 4 | H21-O2_4-21 | 1.8875 | 0.1252 |
| 5 | N1-H3_5-20 | 1.9916 | 0.1272 |
| 5 | H61-O4_5-20 | 1.9794 | 0.1772 |
| 6 | N1-H3_6-19 | 1.9770 | 0.1176 |
| 6 | H61-O4_6-19 | 2.0080 | 0.1859 |
| 7 | H3-N1_7-18 | 1.9742 | 0.1186 |
| 7 | O4-H61_7-18 | 2.0039 | 0.1816 |
| 8 | H3-N1_8-17 | 2.0034 | 0.1350 |
| 8 | O4-H61_8-17 | 1.9786 | 0.1806 |
| 9 | H41-O6_9-16 | 1.9700 | 0.1732 |
| 9 | N3-H1_9-16 | 1.9664 | 0.0938 |
| 9 | O2-H21_9-16 | 1.8810 | 0.1232 |
| 10 | O6-H41_10-15 | 1.9563 | 0.1546 |
| 10 | H1-N3_10-15 | 1.9797 | 0.0970 |
| 10 | H21-O2_10-15 | 1.9031 | 0.1291 |
| 11 | H41-O6_11-14 | 1.9539 | 0.1709 |
| 11 | N3-H1_11-14 | 1.9786 | 0.1075 |
| 11 | O2-H21_11-14 | 1.9118 | 0.1548 |
| 12 | O6-H41_12-13 | 5.7353 | 3.3713 |
| 12 | H1-N3_12-13 | 5.5058 | 3.2779 |
| 12 | H21-O2_12-13 | 5.4733 | 3.3813 |
