Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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| 5' |
C |
- |
G |
- |
C |
- |
G |
- |
A |
- |
A |
- |
T |
- |
T |
- |
C |
- |
G |
- |
C |
- |
G |
3' |
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| |
x |
| |
x |
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x |
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x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
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x |
| |
| 3' |
G |
- |
C |
- |
G |
- |
C |
- |
T |
- |
T |
- |
A |
- |
A |
- |
G |
- |
C |
- |
G |
- |
C |
5' |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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16 |
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15 |
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14 |
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13 |
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Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H41-24_O6-1 | 2.039 | 0.258 |
| Mean | Stdev |
| 1_N3-24_H1-1 | 1.968 | 0.120 |
| Mean | Stdev |
| 1_O2-24_H21-1 | 1.927 | 0.148 |
| Mean | Stdev |
| 10_H1-15_N3-10 | 1.974 | 0.093 |
| Mean | Stdev |
| 10_H21-15_O2-10 | 1.899 | 0.124 |
| Mean | Stdev |
| 10_O6-15_H41-10 | 1.948 | 0.153 |
| Mean | Stdev |
| 11_H41-14_O6-11 | 1.940 | 0.148 |
| Mean | Stdev |
| 11_N3-14_H1-11 | 1.966 | 0.093 |
| Mean | Stdev |
| 11_O2-14_H21-11 | 1.891 | 0.124 |
| Mean | Stdev |
| 12_H1-13_N3-12 | 2.240 | 0.942 |
| Mean | Stdev |
| 12_H21-13_O2-12 | 2.160 | 0.838 |
| Mean | Stdev |
| 12_O6-13_H41-12 | 2.362 | 1.241 |
| Mean | Stdev |
| 2_H1-23_N3-2 | 1.967 | 0.090 |
| Mean | Stdev |
| 2_H21-23_O2-2 | 1.899 | 0.124 |
| Mean | Stdev |
| 2_O6-23_H41-2 | 1.940 | 0.146 |
| Mean | Stdev |
| 3_H41-22_O6-3 | 1.966 | 0.162 |
| Mean | Stdev |
| 3_N3-22_H1-3 | 1.979 | 0.093 |
| Mean | Stdev |
| 3_O2-22_H21-3 | 1.898 | 0.121 |
| Mean | Stdev |
| 4_H1-21_N3-4 | 1.969 | 0.093 |
| Mean | Stdev |
| 4_H21-21_O2-4 | 1.895 | 0.128 |
| Mean | Stdev |
| 4_O6-21_H41-4 | 1.961 | 0.161 |
| Mean | Stdev |
| 5_H61-20_O4-5 | 2.009 | 0.211 |
| Mean | Stdev |
| 5_N1-20_H3-5 | 1.998 | 0.134 |
| Mean | Stdev |
| 6_H61-19_O4-6 | 1.996 | 0.173 |
| Mean | Stdev |
| 6_N1-19_H3-6 | 1.980 | 0.115 |
| Mean | Stdev |
| 7_H3-18_N1-7 | 1.976 | 0.118 |
| Mean | Stdev |
| 7_O4-18_H61-7 | 1.991 | 0.169 |
| Mean | Stdev |
| 8_H3-17_N1-8 | 1.988 | 0.125 |
| Mean | Stdev |
| 8_O4-17_H61-8 | 1.989 | 0.188 |
| Mean | Stdev |
| 9_H41-16_O6-9 | 1.970 | 0.169 |
| Mean | Stdev |
| 9_N3-16_H1-9 | 1.970 | 0.095 |
| Mean | Stdev |
| 9_O2-16_H21-9 | 1.887 | 0.124 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | H41-O6_1-24 | 2.0387 | 0.2582 |
| 1 | N3-H1_1-24 | 1.9680 | 0.1200 |
| 1 | O2-H21_1-24 | 1.9273 | 0.1478 |
| 2 | O6-H41_2-23 | 1.9402 | 0.1456 |
| 2 | H1-N3_2-23 | 1.9669 | 0.0903 |
| 2 | H21-O2_2-23 | 1.8990 | 0.1245 |
| 3 | H41-O6_3-22 | 1.9655 | 0.1623 |
| 3 | N3-H1_3-22 | 1.9786 | 0.0933 |
| 3 | O2-H21_3-22 | 1.8981 | 0.1206 |
| 4 | O6-H41_4-21 | 1.9610 | 0.1609 |
| 4 | H1-N3_4-21 | 1.9693 | 0.0930 |
| 4 | H21-O2_4-21 | 1.8946 | 0.1281 |
| 5 | N1-H3_5-20 | 1.9977 | 0.1338 |
| 5 | H61-O4_5-20 | 2.0094 | 0.2108 |
| 6 | N1-H3_6-19 | 1.9798 | 0.1146 |
| 6 | H61-O4_6-19 | 1.9956 | 0.1732 |
| 7 | H3-N1_7-18 | 1.9757 | 0.1178 |
| 7 | O4-H61_7-18 | 1.9913 | 0.1693 |
| 8 | H3-N1_8-17 | 1.9876 | 0.1254 |
| 8 | O4-H61_8-17 | 1.9890 | 0.1877 |
| 9 | H41-O6_9-16 | 1.9697 | 0.1688 |
| 9 | N3-H1_9-16 | 1.9700 | 0.0952 |
| 9 | O2-H21_9-16 | 1.8872 | 0.1243 |
| 10 | O6-H41_10-15 | 1.9481 | 0.1533 |
| 10 | H1-N3_10-15 | 1.9745 | 0.0935 |
| 10 | H21-O2_10-15 | 1.8995 | 0.1242 |
| 11 | H41-O6_11-14 | 1.9398 | 0.1483 |
| 11 | N3-H1_11-14 | 1.9659 | 0.0931 |
| 11 | O2-H21_11-14 | 1.8913 | 0.1240 |
| 12 | O6-H41_12-13 | 2.3617 | 1.2406 |
| 12 | H1-N3_12-13 | 2.2403 | 0.9424 |
| 12 | H21-O2_12-13 | 2.1597 | 0.8383 |
