PMut

Sample Predictor

Predictor information

Name	Sample Predictor
Created	Dec. 30, 2016, 10:58 p.m.
Number of proteins	95
Number of variants	98: 54 neutral / 44 disease

Log Completed

[2016-12-31 08:16:47] Checking computation status
[2016-12-31 08:16:57] Computing missing alignments
[2016-12-31 08:16:57] Computing features for the variants
[2016-12-31 08:16:57] Features of 98 variants already computed.
[2016-12-31 08:16:57] Drawing feature distribution plots
[2016-12-31 08:17:10] Training classifier
[2016-12-31 08:17:10] Evaluating classifier

Step 1. Multiple Sequence Alignments

100% Done 95 of 95 BLAST UniRef100
100% Done 95 of 95 BLAST UniRef90
100% Done 95 of 95 Kalign UniRef100
100% Done 95 of 95 Kalign UniRef90

Step 2. Features

100% Done 98 of 98 Features computed
100% Done 12 of 12 Feature distribution charts

Step 3. Classifier training

Done Train classifier

Step 4. Classifier evaluation

Done k-fold cross-validation
Done k-fold stratified cross-validation
Done k-fold cross-validation with 50% sequence identity exclusion