{
    "id": "genion",
    "description": "Wrapper class for the GROMACS genion module.",
    "arguments": [
        {
            "id": "config",
            "required": false,
            "description": "Configuration file for the genion tool",
            "filetype": "input",
            "sample": "https:\/\/raw.githubusercontent.com\/bioexcel\/biobb_md\/master\/biobb_md\/test\/data\/config\/config_genion.json",
            "formats": [
                ".*\\.json$",
                ".*\\.yml$",
                ".*\\.yaml$"
            ]
        },
        {
            "id": "input_tpr_path",
            "required": true,
            "description": "Path to the input portable run input TPR file",
            "filetype": "input",
            "sample": "https:\/\/github.com\/bioexcel\/biobb_md\/raw\/master\/biobb_md\/test\/data\/gromacs\/genion.tpr",
            "formats": [
                ".*\\.tpr$"
            ]
        },
        {
            "id": "output_gro_path",
            "required": true,
            "description": "Path to the input structure GRO file",
            "filetype": "output",
            "sample": "https:\/\/github.com\/bioexcel\/biobb_md\/raw\/master\/biobb_md\/test\/reference\/gromacs\/ref_genion.gro",
            "formats": [
                ".*\\.gro$"
            ]
        },
        {
            "id": "input_top_zip_path",
            "required": true,
            "description": "Path the input TOP topology in zip format",
            "filetype": "input",
            "sample": "https:\/\/github.com\/bioexcel\/biobb_md\/raw\/master\/biobb_md\/test\/data\/gromacs\/genion.zip",
            "formats": [
                ".*\\.zip$"
            ]
        },
        {
            "id": "output_top_zip_path",
            "required": true,
            "description": "Path the output topology TOP and ITP files zipball",
            "filetype": "output",
            "sample": "https:\/\/github.com\/bioexcel\/biobb_md\/raw\/master\/biobb_md\/test\/reference\/gromacs\/ref_genion.zip",
            "formats": [
                ".*\\.zip$"
            ]
        },
        {
            "id": "input_ndx_path",
            "required": false,
            "description": "Path to the input index NDX file",
            "filetype": "input",
            "sample": null,
            "formats": [
                ".*\\.ndx$"
            ]
        }
    ]
}