{
    "id": "fix_side_chain",
    "description": "Class to model the missing atoms in amino acid side chains of a PDB.",
    "arguments": [
        {
            "id": "config",
            "required": false,
            "description": "Configuration file for the fix_side_chain tool",
            "filetype": "input",
            "sample": "https:\/\/raw.githubusercontent.com\/bioexcel\/biobb_model\/master\/biobb_model\/test\/data\/config\/config_fix_side_chain.json",
            "formats": [
                ".*\\.json$",
                ".*\\.yml$",
                ".*\\.yaml$"
            ]
        },
        {
            "id": "input_pdb_path",
            "required": true,
            "description": "Input PDB file path",
            "filetype": "input",
            "sample": "https:\/\/github.com\/bioexcel\/biobb_model\/raw\/master\/biobb_model\/test\/data\/model\/2ki5.pdb",
            "formats": [
                ".*\\.pdb$"
            ]
        },
        {
            "id": "output_pdb_path",
            "required": true,
            "description": "Output PDB file path",
            "filetype": "output",
            "sample": "https:\/\/github.com\/bioexcel\/biobb_model\/raw\/master\/biobb_model\/test\/reference\/model\/output_pdb_path.pdb",
            "formats": [
                ".*\\.pdb$"
            ]
        }
    ]
}