$ global fps=16 render=t draft=f name=panels
$ base0 resolution=1600,750
repeat nr sr t1 t3 [11 12 21 22 31 32 41 42 51 52 61 62] [1 2 3 4 5 6 7 8 9 10 11 12] [4 4 12 12 20 20 28 28 36 36 44 44] [42 42 34 34 26 26 18 18 10 10 2 2]
$ s<nr> visualization=vis<sr>.vmd resolution=600,750 variables=t1:<t1>,t3:<t3>
end repeat

# base0
{do_nothing t=2s;
repeat nr xx yy [11 12 21 22 31 32 41 42 51 52 61 62] [0 0 0 0 0 0 0.875 0.875 0.875 0.875 0.875 0.875] [0.000 0.000 0.333 0.333 0.666 0.666 0.000 0.000 0.333 0.333 0.666 0.666]
add_overlay scene=s<nr> origin=<xx>,<yy> relative_size=0.333 mode=u alias=b<nr> transparent_background=t;
end repeat
}

repeat x y al1 al2 pdb [0 0 0 0.875 0.875 0.875] [0.0 0.333 0.666 0.0 0.333 0.666] [b11 b21 b31 b41 b51 b61] [b12 b22 b32 b42 b52 b62] [1JRN 1F7Y 1T4X 4C64 1RNA 4XK0]
{do_nothing t=2s;
add_overlay origin=<x>:0.125,<y>:0 relative_size=0.333:1 mode=n alias=<al1>;
add_overlay origin=<x>:0.5,<y>:0 relative_size=0.333:1 mode=n alias=<al2>}
{do_nothing t=4s;
add_overlay text=<pdb> textbox=t origin=0,0.35 center=t}
{do_nothing t=2s;
add_overlay origin=0.125:<x>,0:<y> relative_size=1:0.333 mode=n alias=<al1>;
add_overlay origin=0.5:<x>,0:<y> relative_size=1:0.333 mode=n alias=<al2>}
end repeat

# s11,s12,s21,s22,s31,s32,s41,s42,s51,s52,s61,s62
animate frames=0
fit_trajectory     selection="all"
do_nothing t=<t1>s
animate frames=1:4498 t=4s
do_nothing t=<t3>s