More info about the tool and a tutorial to start using this web are available.
Normal Mode Analysis
Insert your structure in PDB or a sequence1 in FASTA format:
Upload your structure in PDB or a sequence1 in FASTA format:
Choose the trajectory to analyze: 1A2N 1A32 1AGI 1AJ4 1AQT 1BFG 1BJ7 1BSN 1CHN 1CQY 1CSP 1CZT 1E8B 1EMR 1FAS 1FVQ 1GND 1HNF 1I6F 1IL6 1J5D 1JLI 1K40 1KTE 1KXA 1LIT 1LKI 1NSO 1OOI 1OPC 1PDO 1PHT 1SDF 1SP2 1SUR 2HVM 3ADK 4CLN
Insert your PDB or SwissProt code (chain optional: 1CZW_B,C-E):
Choose a region of your protein to be analyzed: First residue: Last residue:
Requested accuracy (%):
Algorithm: Linear Kovacs Mixed
Force constant (kcal/mol*Ų): Cut-off radius (Å):
Cut-off radius (Å): Temperature (K):
Sigma (Å): Sigma Go (Å):
Steps: dt (s):
Output frequency (steps):
Const (kcal/mol*Ų): r0 (Å):
Temporarily out of order
Compressed PCZ file:
Analysis reload file:
E-Mail address: You will be notified by email when results are available. Please, make sure that the message is not blocked by your anti-spam filter. Results will be available for download during 7 days.
1 (For uploaded sequences, analysis will be performed on the closest homologue of known 3D structure)
