Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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A |
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A |
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A |
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T |
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T |
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A |
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A |
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A |
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G |
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C |
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G |
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C |
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A |
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A |
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G |
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A |
3' |
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3' |
C |
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G |
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T |
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T |
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T |
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A |
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A |
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T |
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T |
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T |
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C |
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G |
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C |
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G |
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T |
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T |
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C |
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T |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 1.999 | 0.124 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.928 | 0.160 |
| Mean | Stdev |
1_O6-36_H41-1 | 1.978 | 0.192 |
| Mean | Stdev |
10_H61-27_O4-10 | 2.012 | 0.183 |
| Mean | Stdev |
10_N1-27_H3-10 | 1.936 | 0.102 |
| Mean | Stdev |
11_H1-26_N3-11 | 1.960 | 0.090 |
| Mean | Stdev |
11_H21-26_O2-11 | 1.901 | 0.121 |
| Mean | Stdev |
11_O6-26_H41-11 | 1.948 | 0.150 |
| Mean | Stdev |
12_H41-25_O6-12 | 1.973 | 0.172 |
| Mean | Stdev |
12_N3-25_H1-12 | 1.968 | 0.096 |
| Mean | Stdev |
12_O2-25_H21-12 | 1.887 | 0.119 |
| Mean | Stdev |
13_H1-24_N3-13 | 1.968 | 0.089 |
| Mean | Stdev |
13_H21-24_O2-13 | 1.907 | 0.128 |
| Mean | Stdev |
13_O6-24_H41-13 | 1.944 | 0.144 |
| Mean | Stdev |
14_H41-23_O6-14 | 1.951 | 0.150 |
| Mean | Stdev |
14_N3-23_H1-14 | 1.976 | 0.093 |
| Mean | Stdev |
14_O2-23_H21-14 | 1.903 | 0.128 |
| Mean | Stdev |
15_H61-22_O4-15 | 2.008 | 0.186 |
| Mean | Stdev |
15_N1-22_H3-15 | 1.960 | 0.112 |
| Mean | Stdev |
16_H61-21_O4-16 | 2.008 | 0.187 |
| Mean | Stdev |
16_N1-21_H3-16 | 1.962 | 0.117 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.970 | 0.114 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.902 | 0.130 |
| Mean | Stdev |
17_O6-20_H41-17 | 2.004 | 0.228 |
| Mean | Stdev |
18_H61-19_O4-18 | 3.817 | 2.282 |
| Mean | Stdev |
18_N1-19_H3-18 | 3.454 | 1.981 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.964 | 0.156 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.975 | 0.095 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.896 | 0.126 |
| Mean | Stdev |
3_H61-34_O4-3 | 1.997 | 0.177 |
| Mean | Stdev |
3_N1-34_H3-3 | 1.963 | 0.115 |
| Mean | Stdev |
4_H61-33_O4-4 | 1.980 | 0.168 |
| Mean | Stdev |
4_N1-33_H3-4 | 1.975 | 0.121 |
| Mean | Stdev |
5_H61-32_O4-5 | 2.016 | 0.185 |
| Mean | Stdev |
5_N1-32_H3-5 | 1.975 | 0.116 |
| Mean | Stdev |
6_H3-31_N1-6 | 1.986 | 0.120 |
| Mean | Stdev |
6_O4-31_H61-6 | 2.015 | 0.185 |
| Mean | Stdev |
7_H3-30_N1-7 | 1.960 | 0.115 |
| Mean | Stdev |
7_O4-30_H61-7 | 2.046 | 0.217 |
| Mean | Stdev |
8_H61-29_O4-8 | 2.013 | 0.206 |
| Mean | Stdev |
8_N1-29_H3-8 | 1.975 | 0.126 |
| Mean | Stdev |
9_H61-28_O4-9 | 1.997 | 0.178 |
| Mean | Stdev |
9_N1-28_H3-9 | 1.969 | 0.116 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 1.9783 | 0.1924 |
1 | H1-N3_1-36 | 1.9990 | 0.1242 |
1 | H21-O2_1-36 | 1.9279 | 0.1600 |
2 | H41-O6_2-35 | 1.9640 | 0.1557 |
2 | N3-H1_2-35 | 1.9750 | 0.0946 |
2 | O2-H21_2-35 | 1.8963 | 0.1255 |
3 | N1-H3_3-34 | 1.9626 | 0.1148 |
3 | H61-O4_3-34 | 1.9970 | 0.1768 |
4 | N1-H3_4-33 | 1.9748 | 0.1207 |
4 | H61-O4_4-33 | 1.9802 | 0.1682 |
5 | N1-H3_5-32 | 1.9752 | 0.1158 |
5 | H61-O4_5-32 | 2.0159 | 0.1855 |
6 | H3-N1_6-31 | 1.9865 | 0.1197 |
6 | O4-H61_6-31 | 2.0155 | 0.1853 |
7 | H3-N1_7-30 | 1.9601 | 0.1148 |
7 | O4-H61_7-30 | 2.0455 | 0.2167 |
8 | N1-H3_8-29 | 1.9752 | 0.1264 |
8 | H61-O4_8-29 | 2.0130 | 0.2063 |
9 | N1-H3_9-28 | 1.9689 | 0.1164 |
9 | H61-O4_9-28 | 1.9968 | 0.1782 |
10 | N1-H3_10-27 | 1.9358 | 0.1019 |
10 | H61-O4_10-27 | 2.0116 | 0.1826 |
11 | O6-H41_11-26 | 1.9479 | 0.1498 |
11 | H1-N3_11-26 | 1.9596 | 0.0903 |
11 | H21-O2_11-26 | 1.9008 | 0.1211 |
12 | H41-O6_12-25 | 1.9728 | 0.1724 |
12 | N3-H1_12-25 | 1.9677 | 0.0960 |
12 | O2-H21_12-25 | 1.8872 | 0.1188 |
13 | O6-H41_13-24 | 1.9443 | 0.1440 |
13 | H1-N3_13-24 | 1.9683 | 0.0886 |
13 | H21-O2_13-24 | 1.9069 | 0.1276 |
14 | H41-O6_14-23 | 1.9507 | 0.1500 |
14 | N3-H1_14-23 | 1.9755 | 0.0929 |
14 | O2-H21_14-23 | 1.9029 | 0.1277 |
15 | N1-H3_15-22 | 1.9603 | 0.1121 |
15 | H61-O4_15-22 | 2.0078 | 0.1863 |
16 | N1-H3_16-21 | 1.9623 | 0.1168 |
16 | H61-O4_16-21 | 2.0082 | 0.1867 |
17 | O6-H41_17-20 | 2.0036 | 0.2275 |
17 | H1-N3_17-20 | 1.9695 | 0.1144 |
17 | H21-O2_17-20 | 1.9022 | 0.1298 |
18 | N1-H3_18-19 | 3.4539 | 1.9813 |
18 | H61-O4_18-19 | 3.8173 | 2.2820 |