Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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| 5' |
G |
- |
C |
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G |
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C |
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A |
- |
T |
- |
G |
- |
C |
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T |
- |
A |
- |
C |
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G |
- |
C |
- |
G |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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| 3' |
C |
- |
G |
- |
C |
- |
G |
- |
T |
- |
A |
- |
C |
- |
G |
- |
A |
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T |
- |
G |
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C |
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G |
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C |
5' |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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16 |
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15 |
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Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H1-28_N3-1 | 2.002 | 0.145 |
| Mean | Stdev |
| 1_H21-28_O2-1 | 1.918 | 0.157 |
| Mean | Stdev |
| 1_O6-28_H41-1 | 1.983 | 0.242 |
| Mean | Stdev |
| 10_H61-19_O4-10 | 1.998 | 0.344 |
| Mean | Stdev |
| 10_N1-19_H3-10 | 2.030 | 0.306 |
| Mean | Stdev |
| 11_H41-18_O6-11 | 1.984 | 0.172 |
| Mean | Stdev |
| 11_N3-18_H1-11 | 1.978 | 0.097 |
| Mean | Stdev |
| 11_O2-18_H21-11 | 1.891 | 0.121 |
| Mean | Stdev |
| 12_H1-17_N3-12 | 1.968 | 0.091 |
| Mean | Stdev |
| 12_H21-17_O2-12 | 1.896 | 0.121 |
| Mean | Stdev |
| 12_O6-17_H41-12 | 1.954 | 0.153 |
| Mean | Stdev |
| 13_H41-16_O6-13 | 1.955 | 0.167 |
| Mean | Stdev |
| 13_N3-16_H1-13 | 1.972 | 0.097 |
| Mean | Stdev |
| 13_O2-16_H21-13 | 1.898 | 0.129 |
| Mean | Stdev |
| 14_H1-15_N3-14 | 2.888 | 2.352 |
| Mean | Stdev |
| 14_H21-15_O2-14 | 2.787 | 2.195 |
| Mean | Stdev |
| 14_O6-15_H41-14 | 3.070 | 2.730 |
| Mean | Stdev |
| 2_H41-27_O6-2 | 1.952 | 0.162 |
| Mean | Stdev |
| 2_N3-27_H1-2 | 1.965 | 0.094 |
| Mean | Stdev |
| 2_O2-27_H21-2 | 1.887 | 0.121 |
| Mean | Stdev |
| 3_H1-26_N3-3 | 1.966 | 0.090 |
| Mean | Stdev |
| 3_H21-26_O2-3 | 1.893 | 0.124 |
| Mean | Stdev |
| 3_O6-26_H41-3 | 3.512 | 0.175 |
| Mean | Stdev |
| 4_H41-25_O6-4 | 1.966 | 0.164 |
| Mean | Stdev |
| 4_N3-25_H1-4 | 1.973 | 0.094 |
| Mean | Stdev |
| 4_O2-25_H21-4 | 1.889 | 0.122 |
| Mean | Stdev |
| 5_H61-24_O4-5 | 2.025 | 0.211 |
| Mean | Stdev |
| 5_N1-24_H3-5 | 1.978 | 0.120 |
| Mean | Stdev |
| 6_H3-23_N1-6 | 1.983 | 0.126 |
| Mean | Stdev |
| 6_O4-23_H61-6 | 2.035 | 0.232 |
| Mean | Stdev |
| 7_H1-22_N3-7 | 1.966 | 0.093 |
| Mean | Stdev |
| 7_H21-22_O2-7 | 1.883 | 0.117 |
| Mean | Stdev |
| 7_O6-22_H41-7 | 1.975 | 0.166 |
| Mean | Stdev |
| 8_H41-21_O6-8 | 2.001 | 0.181 |
| Mean | Stdev |
| 8_N3-21_H1-8 | 1.978 | 0.097 |
| Mean | Stdev |
| 8_O2-21_H21-8 | 1.902 | 0.130 |
| Mean | Stdev |
| 9_H3-20_N1-9 | 1.961 | 0.116 |
| Mean | Stdev |
| 9_O4-20_H61-9 | 2.061 | 0.257 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | O6-H41_1-28 | 1.9828 | 0.2421 |
| 1 | H1-N3_1-28 | 2.0018 | 0.1447 |
| 1 | H21-O2_1-28 | 1.9181 | 0.1570 |
| 2 | H41-O6_2-27 | 1.9515 | 0.1615 |
| 2 | N3-H1_2-27 | 1.9649 | 0.0942 |
| 2 | O2-H21_2-27 | 1.8875 | 0.1209 |
| 3 | O6-H41_3-26 | 3.5124 | 0.1746 |
| 3 | H1-N3_3-26 | 1.9662 | 0.0905 |
| 3 | H21-O2_3-26 | 1.8927 | 0.1241 |
| 4 | H41-O6_4-25 | 1.9659 | 0.1641 |
| 4 | N3-H1_4-25 | 1.9731 | 0.0940 |
| 4 | O2-H21_4-25 | 1.8894 | 0.1218 |
| 5 | N1-H3_5-24 | 1.9782 | 0.1201 |
| 5 | H61-O4_5-24 | 2.0247 | 0.2106 |
| 6 | H3-N1_6-23 | 1.9832 | 0.1257 |
| 6 | O4-H61_6-23 | 2.0347 | 0.2316 |
| 7 | O6-H41_7-22 | 1.9748 | 0.1656 |
| 7 | H1-N3_7-22 | 1.9660 | 0.0932 |
| 7 | H21-O2_7-22 | 1.8831 | 0.1170 |
| 8 | H41-O6_8-21 | 2.0011 | 0.1807 |
| 8 | N3-H1_8-21 | 1.9780 | 0.0969 |
| 8 | O2-H21_8-21 | 1.9019 | 0.1300 |
| 9 | H3-N1_9-20 | 1.9607 | 0.1159 |
| 9 | O4-H61_9-20 | 2.0613 | 0.2574 |
| 10 | N1-H3_10-19 | 2.0303 | 0.3065 |
| 10 | H61-O4_10-19 | 1.9981 | 0.3439 |
| 11 | H41-O6_11-18 | 1.9839 | 0.1721 |
| 11 | N3-H1_11-18 | 1.9784 | 0.0970 |
| 11 | O2-H21_11-18 | 1.8907 | 0.1212 |
| 12 | O6-H41_12-17 | 1.9542 | 0.1535 |
| 12 | H1-N3_12-17 | 1.9676 | 0.0907 |
| 12 | H21-O2_12-17 | 1.8958 | 0.1211 |
| 13 | H41-O6_13-16 | 1.9554 | 0.1665 |
| 13 | N3-H1_13-16 | 1.9718 | 0.0967 |
| 13 | O2-H21_13-16 | 1.8978 | 0.1285 |
| 14 | O6-H41_14-15 | 3.0701 | 2.7299 |
| 14 | H1-N3_14-15 | 2.8875 | 2.3517 |
| 14 | H21-O2_14-15 | 2.7870 | 2.1950 |
