Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
|
1 |
|
2 |
|
3 |
|
4 |
|
5 |
|
6 |
|
7 |
|
8 |
|
9 |
|
10 |
|
11 |
|
12 |
|
| 5' |
C |
- |
C |
- |
T |
- |
C |
- |
A |
- |
G |
- |
G |
- |
C |
- |
C |
- |
T |
- |
C |
- |
C |
3' |
|
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
| 3' |
G |
- |
G |
- |
A |
- |
G |
- |
T |
- |
C |
- |
C |
- |
G |
- |
G |
- |
A |
- |
G |
- |
G |
5' |
|
24 |
|
23 |
|
22 |
|
21 |
|
20 |
|
19 |
|
18 |
|
17 |
|
16 |
|
15 |
|
14 |
|
13 |
|
Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H41-24_O6-1 | 2.032 | 0.501 |
| Mean | Stdev |
| 1_N3-24_H1-1 | 2.002 | 0.366 |
| Mean | Stdev |
| 1_O2-24_H21-1 | 1.961 | 0.346 |
| Mean | Stdev |
| 10_H3-15_N1-10 | 1.980 | 0.123 |
| Mean | Stdev |
| 10_O4-15_H61-10 | 1.997 | 0.188 |
| Mean | Stdev |
| 11_H41-14_O6-11 | 1.970 | 0.163 |
| Mean | Stdev |
| 11_N3-14_H1-11 | 1.973 | 0.096 |
| Mean | Stdev |
| 11_O2-14_H21-11 | 1.901 | 0.130 |
| Mean | Stdev |
| 12_H41-13_O6-12 | 2.323 | 1.824 |
| Mean | Stdev |
| 12_N3-13_H1-12 | 2.322 | 1.907 |
| Mean | Stdev |
| 12_O2-13_H21-12 | 2.264 | 2.128 |
| Mean | Stdev |
| 2_H41-23_O6-2 | 1.988 | 0.179 |
| Mean | Stdev |
| 2_N3-23_H1-2 | 1.956 | 0.091 |
| Mean | Stdev |
| 2_O2-23_H21-2 | 1.875 | 0.118 |
| Mean | Stdev |
| 3_H3-22_N1-3 | 1.990 | 0.126 |
| Mean | Stdev |
| 3_O4-22_H61-3 | 1.977 | 0.178 |
| Mean | Stdev |
| 4_H41-21_O6-4 | 1.980 | 0.167 |
| Mean | Stdev |
| 4_N3-21_H1-4 | 1.977 | 0.097 |
| Mean | Stdev |
| 4_O2-21_H21-4 | 1.882 | 0.124 |
| Mean | Stdev |
| 5_H61-20_O4-5 | 1.976 | 0.182 |
| Mean | Stdev |
| 5_N1-20_H3-5 | 1.983 | 0.129 |
| Mean | Stdev |
| 6_H1-19_N3-6 | 1.966 | 0.096 |
| Mean | Stdev |
| 6_H21-19_O2-6 | 1.879 | 0.119 |
| Mean | Stdev |
| 6_O6-19_H41-6 | 1.986 | 0.184 |
| Mean | Stdev |
| 7_H1-18_N3-7 | 1.967 | 0.095 |
| Mean | Stdev |
| 7_H21-18_O2-7 | 1.893 | 0.124 |
| Mean | Stdev |
| 7_O6-18_H41-7 | 1.974 | 0.169 |
| Mean | Stdev |
| 8_H41-17_O6-8 | 1.976 | 0.169 |
| Mean | Stdev |
| 8_N3-17_H1-8 | 1.969 | 0.092 |
| Mean | Stdev |
| 8_O2-17_H21-8 | 1.895 | 0.123 |
| Mean | Stdev |
| 9_H41-16_O6-9 | 1.989 | 0.184 |
| Mean | Stdev |
| 9_N3-16_H1-9 | 1.968 | 0.098 |
| Mean | Stdev |
| 9_O2-16_H21-9 | 1.882 | 0.120 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | H41-O6_1-24 | 2.0318 | 0.5009 |
| 1 | N3-H1_1-24 | 2.0022 | 0.3664 |
| 1 | O2-H21_1-24 | 1.9608 | 0.3457 |
| 2 | H41-O6_2-23 | 1.9876 | 0.1791 |
| 2 | N3-H1_2-23 | 1.9564 | 0.0910 |
| 2 | O2-H21_2-23 | 1.8752 | 0.1181 |
| 3 | H3-N1_3-22 | 1.9900 | 0.1257 |
| 3 | O4-H61_3-22 | 1.9773 | 0.1781 |
| 4 | H41-O6_4-21 | 1.9799 | 0.1666 |
| 4 | N3-H1_4-21 | 1.9771 | 0.0973 |
| 4 | O2-H21_4-21 | 1.8816 | 0.1241 |
| 5 | N1-H3_5-20 | 1.9827 | 0.1286 |
| 5 | H61-O4_5-20 | 1.9765 | 0.1824 |
| 6 | O6-H41_6-19 | 1.9860 | 0.1836 |
| 6 | H1-N3_6-19 | 1.9658 | 0.0955 |
| 6 | H21-O2_6-19 | 1.8786 | 0.1193 |
| 7 | O6-H41_7-18 | 1.9737 | 0.1693 |
| 7 | H1-N3_7-18 | 1.9671 | 0.0951 |
| 7 | H21-O2_7-18 | 1.8934 | 0.1238 |
| 8 | H41-O6_8-17 | 1.9760 | 0.1691 |
| 8 | N3-H1_8-17 | 1.9686 | 0.0917 |
| 8 | O2-H21_8-17 | 1.8947 | 0.1230 |
| 9 | H41-O6_9-16 | 1.9893 | 0.1838 |
| 9 | N3-H1_9-16 | 1.9675 | 0.0977 |
| 9 | O2-H21_9-16 | 1.8818 | 0.1197 |
| 10 | H3-N1_10-15 | 1.9800 | 0.1232 |
| 10 | O4-H61_10-15 | 1.9966 | 0.1882 |
| 11 | H41-O6_11-14 | 1.9699 | 0.1627 |
| 11 | N3-H1_11-14 | 1.9730 | 0.0963 |
| 11 | O2-H21_11-14 | 1.9010 | 0.1298 |
| 12 | H41-O6_12-13 | 2.3227 | 1.8238 |
| 12 | N3-H1_12-13 | 2.3220 | 1.9070 |
| 12 | O2-H21_12-13 | 2.2643 | 2.1283 |
