NAFlex. Nucleic Acids Flexibility

Nucleic Acid Analysis - Stiffness Analysis

(Using Curves+ program)

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Interactive Sequence (see Help)

Average Results

Results by Time

Stiffness by Helical Parameters

Stiffness By Base Pair Step

Shift

Slide

Rise

Tilt

Roll

Twist

[Image courtesy of Curves+]

Shift

Slide

Rise

Tilt

Roll

Twist

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	0.878	0.000	0.000	-0.041	0.000	0.000
Slide	0.000	2.155	1.665	0.000	-0.069	-0.133
Rise	0.000	1.665	7.959	0.000	-0.002	-0.178
Tilt	-0.041	0.000	0.000	0.029	0.000	0.000
Roll	0.000	-0.069	-0.002	0.000	0.023	0.007
Twist	0.000	-0.133	-0.178	0.000	0.007	0.027

[Image courtesy of Curves+]

Units:
Diagonal Shift/Slide/Rise in kcal/(mol*Å²), Diagonal Tilt/Roll/Twist in kcal/(mol*degree²)
Out of Diagonal: Shift/Slide/Rise in kcal/(mol*Å), Out of Diagonal Tilt/Roll/Twist in kcal/(mol*degree)

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	0.628	0.000	0.000	-0.075	0.000	0.000
Slide	0.000	2.674	0.694	0.000	0.007	-0.111
Rise	0.000	0.694	7.629	0.000	-0.098	-0.217
Tilt	-0.075	0.000	0.000	0.028	0.000	0.000
Roll	0.000	0.007	-0.098	0.000	0.016	0.008
Twist	0.000	-0.111	-0.217	0.000	0.008	0.023

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	1.045	0.000	0.000	-0.088	0.000	0.000
Slide	0.000	1.752	1.765	0.000	-0.005	-0.130
Rise	0.000	1.765	7.423	0.000	-0.012	-0.172
Tilt	-0.088	0.000	0.000	0.036	0.000	0.000
Roll	0.000	-0.005	-0.012	0.000	0.019	0.003
Twist	0.000	-0.130	-0.172	0.000	0.003	0.030

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	1.148	0.000	0.000	-0.044	0.000	0.000
Slide	0.000	2.288	1.519	0.000	-0.054	-0.123
Rise	0.000	1.519	6.717	0.000	0.006	-0.132
Tilt	-0.044	0.000	0.000	0.033	0.000	0.000
Roll	0.000	-0.054	0.006	0.000	0.022	0.003
Twist	0.000	-0.123	-0.132	0.000	0.003	0.030

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	0.944	0.000	0.000	-0.040	0.000	0.000
Slide	0.000	1.981	1.501	0.000	-0.061	-0.098
Rise	0.000	1.501	7.368	0.000	-0.019	-0.189
Tilt	-0.040	0.000	0.000	0.029	0.000	0.000
Roll	0.000	-0.061	-0.019	0.000	0.020	0.006
Twist	0.000	-0.098	-0.189	0.000	0.006	0.023

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	2.286	0.000	0.000	-0.121	0.000	0.000
Slide	0.000	2.923	2.954	0.000	-0.004	-0.098
Rise	0.000	2.954	11.169	0.000	0.119	-0.197
Tilt	-0.121	0.000	0.000	0.040	0.000	0.000
Roll	0.000	-0.004	0.119	0.000	0.029	0.007
Twist	0.000	-0.098	-0.197	0.000	0.007	0.035

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	1.176	0.000	0.000	-0.092	0.000	0.000
Slide	0.000	1.819	1.867	0.000	-0.000	-0.126
Rise	0.000	1.867	7.294	0.000	0.002	-0.152
Tilt	-0.092	0.000	0.000	0.036	0.000	0.000
Roll	0.000	-0.000	0.002	0.000	0.020	0.003
Twist	0.000	-0.126	-0.152	0.000	0.003	0.030

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	0.940	0.000	0.000	-0.084	0.000	0.000
Slide	0.000	2.084	1.075	0.000	-0.033	-0.119
Rise	0.000	1.075	7.647	0.000	-0.044	-0.155
Tilt	-0.084	0.000	0.000	0.030	0.000	0.000
Roll	0.000	-0.033	-0.044	0.000	0.018	0.008
Twist	0.000	-0.119	-0.155	0.000	0.008	0.026

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	0.834	0.000	0.000	-0.102	0.000	0.000
Slide	0.000	2.380	1.143	0.000	-0.039	-0.132
Rise	0.000	1.143	8.593	0.000	-0.009	-0.150
Tilt	-0.102	0.000	0.000	0.033	0.000	0.000
Roll	0.000	-0.039	-0.009	0.000	0.020	0.010
Twist	0.000	-0.132	-0.150	0.000	0.010	0.030

[Image courtesy of Curves+]

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	Mean	Stdev
-agct.5.cte	0.000	0.000

	Mean	Stdev
-catg.4.cte	0.000	0.000

	Mean	Stdev
-ccgg.8.cte	0.000	0.000

	Mean	Stdev
-ctag.2.cte	0.000	0.000

	Mean	Stdev
-ctag.9.cte	0.000	0.000

	Mean	Stdev
-gcgc.7.cte	0.000	0.000

	Mean	Stdev
-ggcc.6.cte	0.000	0.000

	Mean	Stdev
-tcga.10.cte	0.000	0.000

	Mean	Stdev
-tcga.3.cte	0.000	0.000

	Mean	Stdev
rise-10-TCGA	3.307	0.297

	Mean	Stdev
roll-10-TCGA	0.517	6.183

	Mean	Stdev
shift-10-TCGA	0.000	0.913

	Mean	Stdev
slide-10-TCGA	-0.163	0.621

	Mean	Stdev
tilt-10-TCGA	0.000	5.104

	Mean	Stdev
twist-10-TCGA	36.032	5.975

	Mean	Stdev
rise-2-CTAG	3.379	0.326

	Mean	Stdev
roll-2-CTAG	0.774	5.377

	Mean	Stdev
shift-2-CTAG	0.000	0.734

	Mean	Stdev
slide-2-CTAG	-0.776	0.618

	Mean	Stdev
tilt-2-CTAG	0.000	4.358

	Mean	Stdev
twist-2-CTAG	31.968	5.112

	Mean	Stdev
rise-3-TCGA	3.266	0.277

	Mean	Stdev
roll-3-TCGA	1.065	5.962

	Mean	Stdev
shift-3-TCGA	0.000	1.060

	Mean	Stdev
slide-3-TCGA	0.069	0.575

	Mean	Stdev
tilt-3-TCGA	0.000	5.304

	Mean	Stdev
twist-3-TCGA	35.674	5.572

	Mean	Stdev
rise-4-CATG	3.116	0.325

	Mean	Stdev
roll-4-CATG	6.941	7.046

	Mean	Stdev
shift-4-CATG	0.000	1.175

	Mean	Stdev
slide-4-CATG	-0.007	0.547

	Mean	Stdev
tilt-4-CATG	0.000	5.616

	Mean	Stdev
twist-4-CATG	31.337	7.205

	Mean	Stdev
rise-5-AGCT	3.232	0.308

	Mean	Stdev
roll-5-AGCT	0.968	5.477

	Mean	Stdev
shift-5-AGCT	0.000	0.846

	Mean	Stdev
slide-5-AGCT	-0.610	0.665

	Mean	Stdev
tilt-5-AGCT	0.000	4.623

	Mean	Stdev
twist-5-AGCT	31.226	5.871

	Mean	Stdev
rise-6-GGCC	3.581	0.331

	Mean	Stdev
roll-6-GGCC	2.741	5.454

	Mean	Stdev
shift-6-GGCC	0.000	0.787

	Mean	Stdev
slide-6-GGCC	-0.808	0.745

	Mean	Stdev
tilt-6-GGCC	0.000	4.471

	Mean	Stdev
twist-6-GGCC	35.143	5.285

	Mean	Stdev
rise-7-GCGC	3.467	0.287

	Mean	Stdev
roll-7-GCGC	-0.126	4.879

	Mean	Stdev
shift-7-GCGC	0.000	0.552

	Mean	Stdev
slide-7-GCGC	-0.908	0.534

	Mean	Stdev
tilt-7-GCGC	0.000	4.153

	Mean	Stdev
twist-7-GCGC	35.127	4.599

	Mean	Stdev
rise-8-CCGG	3.526	0.325

	Mean	Stdev
roll-8-CCGG	2.831	5.639

	Mean	Stdev
shift-8-CCGG	0.000	0.840

	Mean	Stdev
slide-8-CCGG	-0.699	0.756

	Mean	Stdev
tilt-8-CCGG	0.000	4.519

	Mean	Stdev
twist-8-CCGG	35.042	5.431

	Mean	Stdev
rise-9-CTAG	3.231	0.329

	Mean	Stdev
roll-9-CTAG	2.503	5.836

	Mean	Stdev
shift-9-CTAG	0.000	0.812

	Mean	Stdev
slide-9-CTAG	-0.595	0.648

	Mean	Stdev
tilt-9-CTAG	0.000	4.611

	Mean	Stdev
twist-9-CTAG	30.206	6.114

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