NAFlex. Nucleic Acids Flexibility

Nucleic Acid Analysis - Stiffness Analysis

(Using Curves+ program)

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Interactive Sequence (see Help)

Average Results

Results by Time

Stiffness by Helical Parameters

Stiffness By Base Pair Step

Shift

Slide

Rise

Tilt

Roll

Twist

[Image courtesy of Curves+]

Shift

Slide

Rise

Tilt

Roll

Twist

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	0.576	0.000	0.000	-0.033	0.000	0.000
Slide	0.000	1.234	0.681	0.000	-0.051	0.013
Rise	0.000	0.681	1.363	0.000	-0.076	0.066
Tilt	-0.033	0.000	0.000	0.003	0.000	0.000
Roll	0.000	-0.051	-0.076	0.000	0.007	-0.001
Twist	0.000	0.013	0.066	0.000	-0.001	0.014

[Image courtesy of Curves+]

Units:
Diagonal Shift/Slide/Rise in kcal/(mol*Å²), Diagonal Tilt/Roll/Twist in kcal/(mol*degree²)
Out of Diagonal: Shift/Slide/Rise in kcal/(mol*Å), Out of Diagonal Tilt/Roll/Twist in kcal/(mol*degree)

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	0.900	0.000	0.000	0.034	0.000	0.000
Slide	0.000	3.043	1.125	0.000	-0.075	-0.003
Rise	0.000	1.125	4.224	0.000	-0.054	0.077
Tilt	0.034	0.000	0.000	0.021	0.000	0.000
Roll	0.000	-0.075	-0.054	0.000	0.012	0.003
Twist	0.000	-0.003	0.077	0.000	0.003	0.013

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	1.376	0.000	0.000	-0.145	0.000	0.000
Slide	0.000	0.848	0.389	0.000	-0.005	0.007
Rise	0.000	0.389	5.154	0.000	-0.195	-0.162
Tilt	-0.145	0.000	0.000	0.022	0.000	0.000
Roll	0.000	-0.005	-0.195	0.000	0.012	0.010
Twist	0.000	0.007	-0.162	0.000	0.010	0.025

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	1.092	0.000	0.000	-0.046	0.000	0.000
Slide	0.000	1.607	0.298	0.000	-0.016	-0.041
Rise	0.000	0.298	6.103	0.000	-0.107	-0.204
Tilt	-0.046	0.000	0.000	0.018	0.000	0.000
Roll	0.000	-0.016	-0.107	0.000	0.014	0.005
Twist	0.000	-0.041	-0.204	0.000	0.005	0.022

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	1.272	0.000	0.000	-0.044	0.000	0.000
Slide	0.000	1.118	0.597	0.000	-0.037	-0.002
Rise	0.000	0.597	2.000	0.000	-0.051	0.041
Tilt	-0.044	0.000	0.000	0.003	0.000	0.000
Roll	0.000	-0.037	-0.051	0.000	0.004	-0.001
Twist	0.000	-0.002	0.041	0.000	-0.001	0.010

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	0.843	0.000	0.000	-0.081	0.000	0.000
Slide	0.000	2.857	1.962	0.000	0.066	-0.062
Rise	0.000	1.962	9.715	0.000	0.137	-0.192
Tilt	-0.081	0.000	0.000	0.034	0.000	0.000
Roll	0.000	0.066	0.137	0.000	0.016	0.001
Twist	0.000	-0.062	-0.192	0.000	0.001	0.024

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	1.045	0.000	0.000	-0.026	0.000	0.000
Slide	0.000	2.362	1.392	0.000	-0.016	-0.038
Rise	0.000	1.392	6.629	0.000	-0.069	-0.144
Tilt	-0.026	0.000	0.000	0.022	0.000	0.000
Roll	0.000	-0.016	-0.069	0.000	0.014	0.009
Twist	0.000	-0.038	-0.144	0.000	0.009	0.026

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	0.171	0.000	0.000	0.008	0.000	0.000
Slide	0.000	0.469	0.163	0.000	-0.012	0.005
Rise	0.000	0.163	0.375	0.000	-0.006	-0.007
Tilt	0.008	0.000	0.000	0.001	0.000	0.000
Roll	0.000	-0.012	-0.006	0.000	0.001	-0.001
Twist	0.000	0.005	-0.007	0.000	-0.001	0.004

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	0.016	0.000	0.000	-0.001	0.000	0.000
Slide	0.000	0.260	0.031	0.000	0.002	0.000
Rise	0.000	0.031	0.088	0.000	0.007	0.002
Tilt	-0.001	0.000	0.000	0.003	0.000	0.000
Roll	0.000	0.002	0.007	0.000	0.001	-0.000
Twist	0.000	0.000	0.002	0.000	-0.000	0.001

[Image courtesy of Curves+]

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	Mean	Stdev
-aatt.5.cte	0.000	0.000

	Mean	Stdev
-atat.6.cte	0.000	0.000

	Mean	Stdev
-cgcg.3.cte	0.000	0.000

	Mean	Stdev
-cgcg.9.cte	0.000	0.000

	Mean	Stdev
-gatc.4.cte	0.000	0.000

	Mean	Stdev
-gcgc.10.cte	0.000	0.000

	Mean	Stdev
-gcgc.2.cte	0.000	0.000

	Mean	Stdev
-tcga.8.cte	0.000	0.000

	Mean	Stdev
-ttaa.7.cte	0.000	0.000

	Mean	Stdev
rise-10-GCGC	3.422	0.299

	Mean	Stdev
roll-10-GCGC	-1.861	6.913

	Mean	Stdev
shift-10-GCGC	0.000	0.950

	Mean	Stdev
slide-10-GCGC	-0.476	0.506

	Mean	Stdev
tilt-10-GCGC	0.000	4.733

	Mean	Stdev
twist-10-GCGC	33.554	5.554

	Mean	Stdev
rise-2-GCGC	3.408	0.336

	Mean	Stdev
roll-2-GCGC	2.132	7.128

	Mean	Stdev
shift-2-GCGC	0.000	0.760

	Mean	Stdev
slide-2-GCGC	-0.677	0.532

	Mean	Stdev
tilt-2-GCGC	0.000	5.228

	Mean	Stdev
twist-2-GCGC	32.855	5.515

	Mean	Stdev
rise-3-CGCG	3.356	0.566

	Mean	Stdev
roll-3-CGCG	16.077	12.490

	Mean	Stdev
shift-3-CGCG	0.000	1.212

	Mean	Stdev
slide-3-CGCG	0.561	0.862

	Mean	Stdev
tilt-3-CGCG	0.000	9.668

	Mean	Stdev
twist-3-CGCG	33.805	5.895

	Mean	Stdev
rise-4-GATC	3.581	0.703

	Mean	Stdev
roll-4-GATC	29.917	18.458

	Mean	Stdev
shift-4-GATC	0.000	0.934

	Mean	Stdev
slide-4-GATC	0.389	0.915

	Mean	Stdev
tilt-4-GATC	0.000	18.598

	Mean	Stdev
twist-4-GATC	31.741	8.117

	Mean	Stdev
rise-5-AATT	4.429	1.287

	Mean	Stdev
roll-5-AATT	30.081	15.197

	Mean	Stdev
shift-5-AATT	0.000	1.822

	Mean	Stdev
slide-5-AATT	-0.259	0.840

	Mean	Stdev
tilt-5-AATT	0.000	26.370

	Mean	Stdev
twist-5-AATT	22.599	8.103

	Mean	Stdev
rise-6-ATAT	3.042	0.434

	Mean	Stdev
roll-6-ATAT	6.679	8.258

	Mean	Stdev
shift-6-ATAT	0.000	0.833

	Mean	Stdev
slide-6-ATAT	-0.584	0.494

	Mean	Stdev
tilt-6-ATAT	0.000	5.450

	Mean	Stdev
twist-6-ATAT	25.910	7.708

	Mean	Stdev
rise-7-TTAA	1.778	3.433

	Mean	Stdev
roll-7-TTAA	45.464	25.862

	Mean	Stdev
shift-7-TTAA	0.000	6.214

	Mean	Stdev
slide-7-TTAA	0.293	1.537

	Mean	Stdev
tilt-7-TTAA	0.000	14.658

	Mean	Stdev
twist-7-TTAA	-2.134	22.062

	Mean	Stdev
rise-8-TCGA	6.409	1.427

	Mean	Stdev
roll-8-TCGA	29.171	28.521

	Mean	Stdev
shift-8-TCGA	0.000	2.387

	Mean	Stdev
slide-8-TCGA	-0.598	1.374

	Mean	Stdev
tilt-8-TCGA	0.024	31.344

	Mean	Stdev
twist-8-TCGA	46.748	13.709

	Mean	Stdev
rise-9-CGCG	3.090	0.386

	Mean	Stdev
roll-9-CGCG	9.573	7.001

	Mean	Stdev
shift-9-CGCG	0.000	0.776

	Mean	Stdev
slide-9-CGCG	0.066	0.620

	Mean	Stdev
tilt-9-CGCG	0.000	6.046

	Mean	Stdev
twist-9-CGCG	31.595	6.453

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