Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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| 5' |
C |
- |
C |
- |
T |
- |
G |
- |
C |
- |
A |
- |
C |
- |
A |
- |
A |
- |
A |
- |
C |
- |
A |
- |
C |
- |
C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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| 3' |
G |
- |
G |
- |
A |
- |
C |
- |
G |
- |
T |
- |
G |
- |
T |
- |
T |
- |
T |
- |
G |
- |
T |
- |
G |
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G |
5' |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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16 |
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15 |
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Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H41-28_O6-1 | 2.023 | 0.346 |
| Mean | Stdev |
| 1_N3-28_H1-1 | 1.987 | 0.217 |
| Mean | Stdev |
| 1_O2-28_H21-1 | 1.946 | 0.213 |
| Mean | Stdev |
| 10_H61-19_O4-10 | 1.983 | 0.179 |
| Mean | Stdev |
| 10_N1-19_H3-10 | 1.981 | 0.127 |
| Mean | Stdev |
| 11_H41-18_O6-11 | 2.007 | 0.190 |
| Mean | Stdev |
| 11_N3-18_H1-11 | 1.980 | 0.108 |
| Mean | Stdev |
| 11_O2-18_H21-11 | 1.889 | 0.123 |
| Mean | Stdev |
| 12_H61-17_O4-12 | 2.008 | 0.211 |
| Mean | Stdev |
| 12_N1-17_H3-12 | 1.959 | 0.113 |
| Mean | Stdev |
| 13_H41-16_O6-13 | 1.992 | 0.204 |
| Mean | Stdev |
| 13_N3-16_H1-13 | 1.976 | 0.122 |
| Mean | Stdev |
| 13_O2-16_H21-13 | 1.897 | 0.143 |
| Mean | Stdev |
| 14_H41-15_O6-14 | 2.676 | 2.022 |
| Mean | Stdev |
| 14_N3-15_H1-14 | 2.271 | 0.888 |
| Mean | Stdev |
| 14_O2-15_H21-14 | 2.040 | 0.643 |
| Mean | Stdev |
| 2_H41-27_O6-2 | 2.008 | 0.193 |
| Mean | Stdev |
| 2_N3-27_H1-2 | 1.963 | 0.094 |
| Mean | Stdev |
| 2_O2-27_H21-2 | 1.885 | 0.124 |
| Mean | Stdev |
| 3_H3-26_N1-3 | 1.957 | 0.112 |
| Mean | Stdev |
| 3_O4-26_H61-3 | 2.009 | 0.200 |
| Mean | Stdev |
| 4_H1-25_N3-4 | 1.978 | 0.094 |
| Mean | Stdev |
| 4_H21-25_O2-4 | 1.903 | 0.125 |
| Mean | Stdev |
| 4_O6-25_H41-4 | 1.964 | 0.153 |
| Mean | Stdev |
| 5_H41-24_O6-5 | 1.960 | 0.168 |
| Mean | Stdev |
| 5_N3-24_H1-5 | 1.971 | 0.097 |
| Mean | Stdev |
| 5_O2-24_H21-5 | 1.892 | 0.121 |
| Mean | Stdev |
| 6_H61-23_O4-6 | 1.965 | 0.173 |
| Mean | Stdev |
| 6_N1-23_H3-6 | 1.982 | 0.124 |
| Mean | Stdev |
| 7_H41-22_O6-7 | 1.988 | 0.184 |
| Mean | Stdev |
| 7_N3-22_H1-7 | 1.986 | 0.108 |
| Mean | Stdev |
| 7_O2-22_H21-7 | 1.892 | 0.126 |
| Mean | Stdev |
| 8_H61-21_O4-8 | 2.013 | 0.236 |
| Mean | Stdev |
| 8_N1-21_H3-8 | 1.976 | 0.181 |
| Mean | Stdev |
| 9_H61-20_O4-9 | 1.997 | 0.184 |
| Mean | Stdev |
| 9_N1-20_H3-9 | 1.976 | 0.122 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | H41-O6_1-28 | 2.0231 | 0.3463 |
| 1 | N3-H1_1-28 | 1.9866 | 0.2166 |
| 1 | O2-H21_1-28 | 1.9456 | 0.2133 |
| 2 | H41-O6_2-27 | 2.0079 | 0.1931 |
| 2 | N3-H1_2-27 | 1.9631 | 0.0940 |
| 2 | O2-H21_2-27 | 1.8846 | 0.1236 |
| 3 | H3-N1_3-26 | 1.9566 | 0.1119 |
| 3 | O4-H61_3-26 | 2.0093 | 0.1996 |
| 4 | O6-H41_4-25 | 1.9641 | 0.1534 |
| 4 | H1-N3_4-25 | 1.9775 | 0.0943 |
| 4 | H21-O2_4-25 | 1.9028 | 0.1253 |
| 5 | H41-O6_5-24 | 1.9605 | 0.1681 |
| 5 | N3-H1_5-24 | 1.9710 | 0.0967 |
| 5 | O2-H21_5-24 | 1.8924 | 0.1210 |
| 6 | N1-H3_6-23 | 1.9825 | 0.1241 |
| 6 | H61-O4_6-23 | 1.9654 | 0.1729 |
| 7 | H41-O6_7-22 | 1.9878 | 0.1845 |
| 7 | N3-H1_7-22 | 1.9865 | 0.1083 |
| 7 | O2-H21_7-22 | 1.8917 | 0.1260 |
| 8 | N1-H3_8-21 | 1.9761 | 0.1811 |
| 8 | H61-O4_8-21 | 2.0134 | 0.2365 |
| 9 | N1-H3_9-20 | 1.9764 | 0.1224 |
| 9 | H61-O4_9-20 | 1.9968 | 0.1841 |
| 10 | N1-H3_10-19 | 1.9809 | 0.1270 |
| 10 | H61-O4_10-19 | 1.9834 | 0.1791 |
| 11 | H41-O6_11-18 | 2.0071 | 0.1898 |
| 11 | N3-H1_11-18 | 1.9800 | 0.1081 |
| 11 | O2-H21_11-18 | 1.8891 | 0.1232 |
| 12 | N1-H3_12-17 | 1.9588 | 0.1130 |
| 12 | H61-O4_12-17 | 2.0084 | 0.2111 |
| 13 | H41-O6_13-16 | 1.9920 | 0.2042 |
| 13 | N3-H1_13-16 | 1.9761 | 0.1225 |
| 13 | O2-H21_13-16 | 1.8969 | 0.1430 |
| 14 | H41-O6_14-15 | 2.6765 | 2.0217 |
| 14 | N3-H1_14-15 | 2.2706 | 0.8884 |
| 14 | O2-H21_14-15 | 2.0403 | 0.6431 |
