Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
|
1 |
|
2 |
|
3 |
|
4 |
|
5 |
|
6 |
|
7 |
|
8 |
|
9 |
|
10 |
|
11 |
|
12 |
|
13 |
|
14 |
|
15 |
|
16 |
|
17 |
|
18 |
|
5' |
C |
- |
C |
- |
A |
- |
G |
- |
A |
- |
A |
- |
C |
- |
A |
- |
T |
- |
C |
- |
A |
- |
A |
- |
G |
- |
A |
- |
A |
- |
C |
- |
A |
- |
G |
3' |
|
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
3' |
G |
- |
G |
- |
T |
- |
C |
- |
T |
- |
T |
- |
G |
- |
T |
- |
A |
- |
G |
- |
T |
- |
T |
- |
C |
- |
T |
- |
T |
- |
G |
- |
T |
- |
C |
5' |
|
36 |
|
35 |
|
34 |
|
33 |
|
32 |
|
31 |
|
30 |
|
29 |
|
28 |
|
27 |
|
26 |
|
25 |
|
24 |
|
23 |
|
22 |
|
21 |
|
20 |
|
19 |
|
Interactive Sequence (see Help)
| Mean | Stdev |
1_H41-36_O6-1 | 2.442 | 1.651 |
| Mean | Stdev |
1_N3-36_H1-1 | 2.408 | 1.544 |
| Mean | Stdev |
1_O2-36_H21-1 | 2.377 | 1.568 |
| Mean | Stdev |
10_H41-27_O6-10 | 1.969 | 0.160 |
| Mean | Stdev |
10_N3-27_H1-10 | 1.971 | 0.093 |
| Mean | Stdev |
10_O2-27_H21-10 | 1.888 | 0.120 |
| Mean | Stdev |
11_H61-26_O4-11 | 1.988 | 0.179 |
| Mean | Stdev |
11_N1-26_H3-11 | 1.972 | 0.120 |
| Mean | Stdev |
12_H61-25_O4-12 | 2.001 | 0.191 |
| Mean | Stdev |
12_N1-25_H3-12 | 1.964 | 0.121 |
| Mean | Stdev |
13_H1-24_N3-13 | 1.963 | 0.094 |
| Mean | Stdev |
13_H21-24_O2-13 | 1.910 | 0.134 |
| Mean | Stdev |
13_O6-24_H41-13 | 1.981 | 0.169 |
| Mean | Stdev |
14_H61-23_O4-14 | 1.978 | 0.175 |
| Mean | Stdev |
14_N1-23_H3-14 | 1.986 | 0.124 |
| Mean | Stdev |
15_H61-22_O4-15 | 1.982 | 0.175 |
| Mean | Stdev |
15_N1-22_H3-15 | 1.973 | 0.120 |
| Mean | Stdev |
16_H41-21_O6-16 | 1.996 | 0.179 |
| Mean | Stdev |
16_N3-21_H1-16 | 1.981 | 0.099 |
| Mean | Stdev |
16_O2-21_H21-16 | 1.887 | 0.121 |
| Mean | Stdev |
17_H61-20_O4-17 | 2.041 | 0.224 |
| Mean | Stdev |
17_N1-20_H3-17 | 1.952 | 0.122 |
| Mean | Stdev |
18_H1-19_N3-18 | 2.421 | 1.527 |
| Mean | Stdev |
18_H21-19_O2-18 | 2.380 | 1.542 |
| Mean | Stdev |
18_O6-19_H41-18 | 2.498 | 1.612 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.968 | 0.189 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.969 | 0.099 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.884 | 0.119 |
| Mean | Stdev |
3_H61-34_O4-3 | 2.047 | 0.460 |
| Mean | Stdev |
3_N1-34_H3-3 | 2.017 | 0.421 |
| Mean | Stdev |
4_H1-33_N3-4 | 1.971 | 0.094 |
| Mean | Stdev |
4_H21-33_O2-4 | 1.913 | 0.133 |
| Mean | Stdev |
4_O6-33_H41-4 | 1.979 | 0.163 |
| Mean | Stdev |
5_H61-32_O4-5 | 1.977 | 0.173 |
| Mean | Stdev |
5_N1-32_H3-5 | 1.980 | 0.123 |
| Mean | Stdev |
6_H61-31_O4-6 | 1.989 | 0.177 |
| Mean | Stdev |
6_N1-31_H3-6 | 1.966 | 0.116 |
| Mean | Stdev |
7_H41-30_O6-7 | 1.994 | 0.188 |
| Mean | Stdev |
7_N3-30_H1-7 | 1.973 | 0.100 |
| Mean | Stdev |
7_O2-30_H21-7 | 1.880 | 0.118 |
| Mean | Stdev |
8_H61-29_O4-8 | 2.018 | 0.195 |
| Mean | Stdev |
8_N1-29_H3-8 | 1.972 | 0.116 |
| Mean | Stdev |
9_H3-28_N1-9 | 2.003 | 0.133 |
| Mean | Stdev |
9_O4-28_H61-9 | 1.993 | 0.182 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | H41-O6_1-36 | 2.4423 | 1.6510 |
1 | N3-H1_1-36 | 2.4084 | 1.5439 |
1 | O2-H21_1-36 | 2.3767 | 1.5680 |
2 | H41-O6_2-35 | 1.9683 | 0.1891 |
2 | N3-H1_2-35 | 1.9693 | 0.0993 |
2 | O2-H21_2-35 | 1.8838 | 0.1191 |
3 | N1-H3_3-34 | 2.0172 | 0.4213 |
3 | H61-O4_3-34 | 2.0469 | 0.4595 |
4 | O6-H41_4-33 | 1.9786 | 0.1630 |
4 | H1-N3_4-33 | 1.9708 | 0.0939 |
4 | H21-O2_4-33 | 1.9126 | 0.1332 |
5 | N1-H3_5-32 | 1.9799 | 0.1235 |
5 | H61-O4_5-32 | 1.9772 | 0.1726 |
6 | N1-H3_6-31 | 1.9659 | 0.1161 |
6 | H61-O4_6-31 | 1.9891 | 0.1768 |
7 | H41-O6_7-30 | 1.9941 | 0.1876 |
7 | N3-H1_7-30 | 1.9727 | 0.1004 |
7 | O2-H21_7-30 | 1.8801 | 0.1183 |
8 | N1-H3_8-29 | 1.9721 | 0.1155 |
8 | H61-O4_8-29 | 2.0180 | 0.1948 |
9 | H3-N1_9-28 | 2.0027 | 0.1327 |
9 | O4-H61_9-28 | 1.9930 | 0.1816 |
10 | H41-O6_10-27 | 1.9692 | 0.1596 |
10 | N3-H1_10-27 | 1.9707 | 0.0935 |
10 | O2-H21_10-27 | 1.8879 | 0.1200 |
11 | N1-H3_11-26 | 1.9720 | 0.1196 |
11 | H61-O4_11-26 | 1.9885 | 0.1787 |
12 | N1-H3_12-25 | 1.9641 | 0.1212 |
12 | H61-O4_12-25 | 2.0005 | 0.1911 |
13 | O6-H41_13-24 | 1.9807 | 0.1689 |
13 | H1-N3_13-24 | 1.9632 | 0.0937 |
13 | H21-O2_13-24 | 1.9099 | 0.1338 |
14 | N1-H3_14-23 | 1.9857 | 0.1240 |
14 | H61-O4_14-23 | 1.9780 | 0.1748 |
15 | N1-H3_15-22 | 1.9728 | 0.1197 |
15 | H61-O4_15-22 | 1.9816 | 0.1753 |
16 | H41-O6_16-21 | 1.9965 | 0.1791 |
16 | N3-H1_16-21 | 1.9806 | 0.0988 |
16 | O2-H21_16-21 | 1.8870 | 0.1207 |
17 | N1-H3_17-20 | 1.9517 | 0.1219 |
17 | H61-O4_17-20 | 2.0409 | 0.2241 |
18 | O6-H41_18-19 | 2.4978 | 1.6120 |
18 | H1-N3_18-19 | 2.4211 | 1.5273 |
18 | H21-O2_18-19 | 2.3803 | 1.5418 |