Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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5' |
A |
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G |
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T |
- |
A |
- |
T |
- |
A |
- |
A |
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T |
- |
T |
- |
A |
- |
T |
- |
T |
- |
A |
- |
T |
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A |
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C |
- |
C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
T |
- |
C |
- |
A |
- |
T |
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A |
- |
T |
- |
T |
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A |
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A |
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T |
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A |
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A |
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T |
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A |
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T |
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G |
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G |
5' |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H61-34_O4-1 | 3.602 | 2.835 |
| Mean | Stdev |
1_N1-34_H3-1 | 3.447 | 2.494 |
| Mean | Stdev |
10_H61-25_O4-10 | 2.027 | 0.217 |
| Mean | Stdev |
10_N1-25_H3-10 | 1.993 | 0.127 |
| Mean | Stdev |
11_H3-24_N1-11 | 1.981 | 0.118 |
| Mean | Stdev |
11_O4-24_H61-11 | 2.016 | 0.186 |
| Mean | Stdev |
12_H3-23_N1-12 | 1.961 | 0.121 |
| Mean | Stdev |
12_O4-23_H61-12 | 2.028 | 0.228 |
| Mean | Stdev |
13_H61-22_O4-13 | 2.042 | 0.284 |
| Mean | Stdev |
13_N1-22_H3-13 | 2.001 | 0.218 |
| Mean | Stdev |
14_H3-21_N1-14 | 1.996 | 0.128 |
| Mean | Stdev |
14_O4-21_H61-14 | 2.014 | 0.197 |
| Mean | Stdev |
15_H61-20_O4-15 | 2.011 | 0.197 |
| Mean | Stdev |
15_N1-20_H3-15 | 1.965 | 0.114 |
| Mean | Stdev |
16_H41-19_O6-16 | 1.988 | 0.170 |
| Mean | Stdev |
16_N3-19_H1-16 | 1.966 | 0.096 |
| Mean | Stdev |
16_O2-19_H21-16 | 1.901 | 0.129 |
| Mean | Stdev |
17_H41-18_O6-17 | 2.044 | 0.335 |
| Mean | Stdev |
17_N3-18_H1-17 | 2.010 | 0.177 |
| Mean | Stdev |
17_O2-18_H21-17 | 1.907 | 0.175 |
| Mean | Stdev |
2_H1-33_N3-2 | 1.970 | 0.101 |
| Mean | Stdev |
2_H21-33_O2-2 | 1.897 | 0.129 |
| Mean | Stdev |
2_O6-33_H41-2 | 1.991 | 0.177 |
| Mean | Stdev |
3_H3-32_N1-3 | 1.978 | 0.122 |
| Mean | Stdev |
3_O4-32_H61-3 | 1.998 | 0.190 |
| Mean | Stdev |
4_H61-31_O4-4 | 2.026 | 0.201 |
| Mean | Stdev |
4_N1-31_H3-4 | 1.990 | 0.123 |
| Mean | Stdev |
5_H3-30_N1-5 | 1.993 | 0.128 |
| Mean | Stdev |
5_O4-30_H61-5 | 2.035 | 0.219 |
| Mean | Stdev |
6_H61-29_O4-6 | 2.017 | 0.202 |
| Mean | Stdev |
6_N1-29_H3-6 | 1.962 | 0.115 |
| Mean | Stdev |
7_H61-28_O4-7 | 2.026 | 0.191 |
| Mean | Stdev |
7_N1-28_H3-7 | 1.976 | 0.118 |
| Mean | Stdev |
8_H3-27_N1-8 | 1.978 | 0.118 |
| Mean | Stdev |
8_O4-27_H61-8 | 2.028 | 0.192 |
| Mean | Stdev |
9_H3-26_N1-9 | 1.953 | 0.109 |
| Mean | Stdev |
9_O4-26_H61-9 | 2.024 | 0.199 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | N1-H3_1-34 | 3.4475 | 2.4937 |
1 | H61-O4_1-34 | 3.6023 | 2.8346 |
2 | O6-H41_2-33 | 1.9908 | 0.1771 |
2 | H1-N3_2-33 | 1.9700 | 0.1009 |
2 | H21-O2_2-33 | 1.8966 | 0.1289 |
3 | H3-N1_3-32 | 1.9777 | 0.1221 |
3 | O4-H61_3-32 | 1.9977 | 0.1899 |
4 | N1-H3_4-31 | 1.9901 | 0.1234 |
4 | H61-O4_4-31 | 2.0258 | 0.2011 |
5 | H3-N1_5-30 | 1.9929 | 0.1280 |
5 | O4-H61_5-30 | 2.0353 | 0.2188 |
6 | N1-H3_6-29 | 1.9616 | 0.1145 |
6 | H61-O4_6-29 | 2.0168 | 0.2015 |
7 | N1-H3_7-28 | 1.9763 | 0.1178 |
7 | H61-O4_7-28 | 2.0265 | 0.1913 |
8 | H3-N1_8-27 | 1.9782 | 0.1176 |
8 | O4-H61_8-27 | 2.0282 | 0.1921 |
9 | H3-N1_9-26 | 1.9530 | 0.1091 |
9 | O4-H61_9-26 | 2.0240 | 0.1993 |
10 | N1-H3_10-25 | 1.9931 | 0.1265 |
10 | H61-O4_10-25 | 2.0268 | 0.2172 |
11 | H3-N1_11-24 | 1.9813 | 0.1183 |
11 | O4-H61_11-24 | 2.0162 | 0.1862 |
12 | H3-N1_12-23 | 1.9613 | 0.1208 |
12 | O4-H61_12-23 | 2.0277 | 0.2276 |
13 | N1-H3_13-22 | 2.0007 | 0.2178 |
13 | H61-O4_13-22 | 2.0418 | 0.2843 |
14 | H3-N1_14-21 | 1.9958 | 0.1276 |
14 | O4-H61_14-21 | 2.0139 | 0.1971 |
15 | N1-H3_15-20 | 1.9646 | 0.1143 |
15 | H61-O4_15-20 | 2.0112 | 0.1966 |
16 | H41-O6_16-19 | 1.9884 | 0.1702 |
16 | N3-H1_16-19 | 1.9655 | 0.0957 |
16 | O2-H21_16-19 | 1.9007 | 0.1288 |
17 | H41-O6_17-18 | 2.0440 | 0.3348 |
17 | N3-H1_17-18 | 2.0103 | 0.1773 |
17 | O2-H21_17-18 | 1.9066 | 0.1754 |