Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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| 5' |
C |
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G |
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C |
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G |
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T |
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X |
- |
G |
- |
A |
- |
C |
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G |
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C |
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G |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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| 3' |
G |
- |
C |
- |
G |
- |
C |
- |
A |
- |
G |
- |
X |
- |
T |
- |
G |
- |
C |
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G |
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C |
5' |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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16 |
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15 |
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14 |
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13 |
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Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H41-24_O6-1 | 2.304 | 1.249 |
| Mean | Stdev |
| 1_N3-24_H1-1 | 2.202 | 0.972 |
| Mean | Stdev |
| 1_O2-24_H21-1 | 2.121 | 0.879 |
| Mean | Stdev |
| 10_H1-15_N3-10 | 1.968 | 0.091 |
| Mean | Stdev |
| 10_H21-15_O2-10 | 1.886 | 0.119 |
| Mean | Stdev |
| 10_O6-15_H41-10 | 1.953 | 0.153 |
| Mean | Stdev |
| 11_H41-14_O6-11 | 1.958 | 0.155 |
| Mean | Stdev |
| 11_N3-14_H1-11 | 1.969 | 0.094 |
| Mean | Stdev |
| 11_O2-14_H21-11 | 1.892 | 0.129 |
| Mean | Stdev |
| 12_H1-13_N3-12 | 3.288 | 2.664 |
| Mean | Stdev |
| 12_H21-13_O2-12 | 3.257 | 2.735 |
| Mean | Stdev |
| 12_O6-13_H41-12 | 3.366 | 2.723 |
| Mean | Stdev |
| 2_H1-23_N3-2 | 1.964 | 0.093 |
| Mean | Stdev |
| 2_H21-23_O2-2 | 1.890 | 0.123 |
| Mean | Stdev |
| 2_O6-23_H41-2 | 1.948 | 0.156 |
| Mean | Stdev |
| 3_H41-22_O6-3 | 1.951 | 0.148 |
| Mean | Stdev |
| 3_N3-22_H1-3 | 1.968 | 0.090 |
| Mean | Stdev |
| 3_O2-22_H21-3 | 1.891 | 0.122 |
| Mean | Stdev |
| 4_H1-21_N3-4 | 1.968 | 0.097 |
| Mean | Stdev |
| 4_H21-21_O2-4 | 1.883 | 0.117 |
| Mean | Stdev |
| 4_O6-21_H41-4 | 1.978 | 0.162 |
| Mean | Stdev |
| 5_H3-20_N1-5 | 2.013 | 0.141 |
| Mean | Stdev |
| 5_O4-20_H61-5 | 1.954 | 0.165 |
| Mean | Stdev |
| 8_H61-17_O4-8 | 1.960 | 0.167 |
| Mean | Stdev |
| 8_N1-17_H3-8 | 2.001 | 0.131 |
| Mean | Stdev |
| 9_H41-16_O6-9 | 1.975 | 0.158 |
| Mean | Stdev |
| 9_N3-16_H1-9 | 1.965 | 0.094 |
| Mean | Stdev |
| 9_O2-16_H21-9 | 1.888 | 0.120 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | H41-O6_1-24 | 2.3038 | 1.2489 |
| 1 | N3-H1_1-24 | 2.2018 | 0.9721 |
| 1 | O2-H21_1-24 | 2.1210 | 0.8794 |
| 2 | O6-H41_2-23 | 1.9475 | 0.1560 |
| 2 | H1-N3_2-23 | 1.9637 | 0.0929 |
| 2 | H21-O2_2-23 | 1.8898 | 0.1229 |
| 3 | H41-O6_3-22 | 1.9507 | 0.1477 |
| 3 | N3-H1_3-22 | 1.9677 | 0.0903 |
| 3 | O2-H21_3-22 | 1.8906 | 0.1218 |
| 4 | O6-H41_4-21 | 1.9775 | 0.1622 |
| 4 | H1-N3_4-21 | 1.9682 | 0.0971 |
| 4 | H21-O2_4-21 | 1.8826 | 0.1166 |
| 5 | H3-N1_5-20 | 2.0134 | 0.1408 |
| 5 | O4-H61_5-20 | 1.9543 | 0.1654 |
| 8 | N1-H3_8-17 | 2.0011 | 0.1314 |
| 8 | H61-O4_8-17 | 1.9605 | 0.1674 |
| 9 | H41-O6_9-16 | 1.9751 | 0.1583 |
| 9 | N3-H1_9-16 | 1.9648 | 0.0938 |
| 9 | O2-H21_9-16 | 1.8876 | 0.1196 |
| 10 | O6-H41_10-15 | 1.9527 | 0.1533 |
| 10 | H1-N3_10-15 | 1.9675 | 0.0915 |
| 10 | H21-O2_10-15 | 1.8862 | 0.1191 |
| 11 | H41-O6_11-14 | 1.9576 | 0.1549 |
| 11 | N3-H1_11-14 | 1.9689 | 0.0936 |
| 11 | O2-H21_11-14 | 1.8922 | 0.1285 |
| 12 | O6-H41_12-13 | 3.3661 | 2.7232 |
| 12 | H1-N3_12-13 | 3.2877 | 2.6641 |
| 12 | H21-O2_12-13 | 3.2570 | 2.7350 |
