Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
- |
C |
- |
C |
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G |
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A |
- |
G |
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C |
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G |
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A |
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G |
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C |
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G |
- |
A |
- |
G |
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C |
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G |
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G |
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C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
C |
- |
G |
- |
G |
- |
C |
- |
T |
- |
C |
- |
G |
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C |
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T |
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C |
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G |
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C |
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T |
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C |
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G |
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C |
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C |
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G |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.002 | 0.126 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.921 | 0.144 |
| Mean | Stdev |
1_O6-36_H41-1 | 1.995 | 0.247 |
| Mean | Stdev |
10_H1-27_N3-10 | 1.958 | 0.088 |
| Mean | Stdev |
10_H21-27_O2-10 | 1.903 | 0.126 |
| Mean | Stdev |
10_O6-27_H41-10 | 1.950 | 0.150 |
| Mean | Stdev |
11_H41-26_O6-11 | 1.966 | 0.169 |
| Mean | Stdev |
11_N3-26_H1-11 | 1.970 | 0.095 |
| Mean | Stdev |
11_O2-26_H21-11 | 1.899 | 0.126 |
| Mean | Stdev |
12_H1-25_N3-12 | 1.970 | 0.124 |
| Mean | Stdev |
12_H21-25_O2-12 | 1.880 | 0.118 |
| Mean | Stdev |
12_O6-25_H41-12 | 1.973 | 0.253 |
| Mean | Stdev |
13_H61-24_O4-13 | 1.961 | 0.170 |
| Mean | Stdev |
13_N1-24_H3-13 | 1.981 | 0.125 |
| Mean | Stdev |
14_H1-23_N3-14 | 1.960 | 0.092 |
| Mean | Stdev |
14_H21-23_O2-14 | 1.906 | 0.128 |
| Mean | Stdev |
14_O6-23_H41-14 | 1.956 | 0.155 |
| Mean | Stdev |
15_H41-22_O6-15 | 1.962 | 0.162 |
| Mean | Stdev |
15_N3-22_H1-15 | 1.967 | 0.091 |
| Mean | Stdev |
15_O2-22_H21-15 | 1.896 | 0.121 |
| Mean | Stdev |
16_H1-21_N3-16 | 1.957 | 0.091 |
| Mean | Stdev |
16_H21-21_O2-16 | 1.875 | 0.115 |
| Mean | Stdev |
16_O6-21_H41-16 | 1.962 | 0.158 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.967 | 0.093 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.910 | 0.128 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.957 | 0.154 |
| Mean | Stdev |
18_H41-19_O6-18 | 2.110 | 0.780 |
| Mean | Stdev |
18_N3-19_H1-18 | 2.040 | 0.306 |
| Mean | Stdev |
18_O2-19_H21-18 | 1.958 | 0.297 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.952 | 0.161 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.967 | 0.096 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.911 | 0.129 |
| Mean | Stdev |
3_H41-34_O6-3 | 1.954 | 0.151 |
| Mean | Stdev |
3_N3-34_H1-3 | 1.958 | 0.090 |
| Mean | Stdev |
3_O2-34_H21-3 | 1.881 | 0.116 |
| Mean | Stdev |
4_H1-33_N3-4 | 1.968 | 0.092 |
| Mean | Stdev |
4_H21-33_O2-4 | 1.886 | 0.124 |
| Mean | Stdev |
4_O6-33_H41-4 | 1.961 | 0.158 |
| Mean | Stdev |
5_H61-32_O4-5 | 1.974 | 0.178 |
| Mean | Stdev |
5_N1-32_H3-5 | 1.977 | 0.123 |
| Mean | Stdev |
6_H1-31_N3-6 | 1.962 | 0.092 |
| Mean | Stdev |
6_H21-31_O2-6 | 1.907 | 0.131 |
| Mean | Stdev |
6_O6-31_H41-6 | 1.957 | 0.152 |
| Mean | Stdev |
7_H41-30_O6-7 | 1.956 | 0.155 |
| Mean | Stdev |
7_N3-30_H1-7 | 1.967 | 0.093 |
| Mean | Stdev |
7_O2-30_H21-7 | 1.904 | 0.129 |
| Mean | Stdev |
8_H1-29_N3-8 | 1.964 | 0.093 |
| Mean | Stdev |
8_H21-29_O2-8 | 1.879 | 0.118 |
| Mean | Stdev |
8_O6-29_H41-8 | 1.962 | 0.162 |
| Mean | Stdev |
9_H61-28_O4-9 | 1.969 | 0.182 |
| Mean | Stdev |
9_N1-28_H3-9 | 1.984 | 0.125 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 1.9954 | 0.2468 |
1 | H1-N3_1-36 | 2.0017 | 0.1260 |
1 | H21-O2_1-36 | 1.9209 | 0.1438 |
2 | H41-O6_2-35 | 1.9517 | 0.1609 |
2 | N3-H1_2-35 | 1.9669 | 0.0958 |
2 | O2-H21_2-35 | 1.9114 | 0.1292 |
3 | H41-O6_3-34 | 1.9545 | 0.1512 |
3 | N3-H1_3-34 | 1.9585 | 0.0896 |
3 | O2-H21_3-34 | 1.8815 | 0.1159 |
4 | O6-H41_4-33 | 1.9614 | 0.1578 |
4 | H1-N3_4-33 | 1.9679 | 0.0922 |
4 | H21-O2_4-33 | 1.8864 | 0.1239 |
5 | N1-H3_5-32 | 1.9772 | 0.1226 |
5 | H61-O4_5-32 | 1.9738 | 0.1780 |
6 | O6-H41_6-31 | 1.9572 | 0.1522 |
6 | H1-N3_6-31 | 1.9615 | 0.0923 |
6 | H21-O2_6-31 | 1.9075 | 0.1306 |
7 | H41-O6_7-30 | 1.9563 | 0.1554 |
7 | N3-H1_7-30 | 1.9668 | 0.0930 |
7 | O2-H21_7-30 | 1.9037 | 0.1286 |
8 | O6-H41_8-29 | 1.9621 | 0.1618 |
8 | H1-N3_8-29 | 1.9643 | 0.0927 |
8 | H21-O2_8-29 | 1.8794 | 0.1181 |
9 | N1-H3_9-28 | 1.9845 | 0.1254 |
9 | H61-O4_9-28 | 1.9690 | 0.1819 |
10 | O6-H41_10-27 | 1.9497 | 0.1502 |
10 | H1-N3_10-27 | 1.9577 | 0.0881 |
10 | H21-O2_10-27 | 1.9029 | 0.1262 |
11 | H41-O6_11-26 | 1.9659 | 0.1686 |
11 | N3-H1_11-26 | 1.9705 | 0.0950 |
11 | O2-H21_11-26 | 1.8992 | 0.1255 |
12 | O6-H41_12-25 | 1.9730 | 0.2526 |
12 | H1-N3_12-25 | 1.9703 | 0.1236 |
12 | H21-O2_12-25 | 1.8804 | 0.1183 |
13 | N1-H3_13-24 | 1.9807 | 0.1248 |
13 | H61-O4_13-24 | 1.9614 | 0.1701 |
14 | O6-H41_14-23 | 1.9565 | 0.1546 |
14 | H1-N3_14-23 | 1.9600 | 0.0922 |
14 | H21-O2_14-23 | 1.9064 | 0.1278 |
15 | H41-O6_15-22 | 1.9623 | 0.1616 |
15 | N3-H1_15-22 | 1.9667 | 0.0912 |
15 | O2-H21_15-22 | 1.8961 | 0.1213 |
16 | O6-H41_16-21 | 1.9622 | 0.1580 |
16 | H1-N3_16-21 | 1.9573 | 0.0909 |
16 | H21-O2_16-21 | 1.8745 | 0.1154 |
17 | O6-H41_17-20 | 1.9573 | 0.1542 |
17 | H1-N3_17-20 | 1.9667 | 0.0934 |
17 | H21-O2_17-20 | 1.9101 | 0.1280 |
18 | H41-O6_18-19 | 2.1102 | 0.7803 |
18 | N3-H1_18-19 | 2.0397 | 0.3064 |
18 | O2-H21_18-19 | 1.9582 | 0.2968 |