Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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5' |
C |
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G |
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G |
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A |
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G |
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A |
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C |
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T |
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A |
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G |
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G |
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C |
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T |
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C |
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G |
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C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
G |
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C |
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C |
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T |
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C |
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T |
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G |
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A |
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T |
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C |
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C |
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G |
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A |
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G |
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C |
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G |
5' |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H41-32_O6-1 | 2.936 | 2.245 |
| Mean | Stdev |
1_N3-32_H1-1 | 2.853 | 2.139 |
| Mean | Stdev |
1_O2-32_H21-1 | 2.797 | 2.204 |
| Mean | Stdev |
10_H1-23_N3-10 | 1.964 | 0.092 |
| Mean | Stdev |
10_H21-23_O2-10 | 1.893 | 0.124 |
| Mean | Stdev |
10_O6-23_H41-10 | 1.994 | 0.174 |
| Mean | Stdev |
11_H1-22_N3-11 | 1.960 | 0.091 |
| Mean | Stdev |
11_H21-22_O2-11 | 1.911 | 0.132 |
| Mean | Stdev |
11_O6-22_H41-11 | 1.955 | 0.157 |
| Mean | Stdev |
12_H41-21_O6-12 | 1.975 | 0.165 |
| Mean | Stdev |
12_N3-21_H1-12 | 1.959 | 0.092 |
| Mean | Stdev |
12_O2-21_H21-12 | 1.900 | 0.124 |
| Mean | Stdev |
13_H3-20_N1-13 | 1.983 | 0.125 |
| Mean | Stdev |
13_O4-20_H61-13 | 1.977 | 0.172 |
| Mean | Stdev |
14_H41-19_O6-14 | 1.960 | 0.158 |
| Mean | Stdev |
14_N3-19_H1-14 | 1.961 | 0.090 |
| Mean | Stdev |
14_O2-19_H21-14 | 1.882 | 0.120 |
| Mean | Stdev |
15_H1-18_N3-15 | 1.974 | 0.091 |
| Mean | Stdev |
15_H21-18_O2-15 | 1.907 | 0.127 |
| Mean | Stdev |
15_O6-18_H41-15 | 1.944 | 0.146 |
| Mean | Stdev |
16_H41-17_O6-16 | 1.983 | 0.223 |
| Mean | Stdev |
16_N3-17_H1-16 | 2.002 | 0.143 |
| Mean | Stdev |
16_O2-17_H21-16 | 1.919 | 0.168 |
| Mean | Stdev |
2_H1-31_N3-2 | 1.963 | 0.097 |
| Mean | Stdev |
2_H21-31_O2-2 | 1.890 | 0.126 |
| Mean | Stdev |
2_O6-31_H41-2 | 1.954 | 0.172 |
| Mean | Stdev |
3_H1-30_N3-3 | 1.976 | 0.095 |
| Mean | Stdev |
3_H21-30_O2-3 | 1.912 | 0.131 |
| Mean | Stdev |
3_O6-30_H41-3 | 1.958 | 0.157 |
| Mean | Stdev |
4_H61-29_O4-4 | 1.989 | 0.183 |
| Mean | Stdev |
4_N1-29_H3-4 | 1.979 | 0.127 |
| Mean | Stdev |
5_H1-28_N3-5 | 1.962 | 0.092 |
| Mean | Stdev |
5_H21-28_O2-5 | 1.915 | 0.135 |
| Mean | Stdev |
5_O6-28_H41-5 | 1.978 | 0.165 |
| Mean | Stdev |
6_H61-27_O4-6 | 1.976 | 0.173 |
| Mean | Stdev |
6_N1-27_H3-6 | 1.984 | 0.123 |
| Mean | Stdev |
7_H41-26_O6-7 | 2.022 | 0.185 |
| Mean | Stdev |
7_N3-26_H1-7 | 1.975 | 0.099 |
| Mean | Stdev |
7_O2-26_H21-7 | 1.895 | 0.126 |
| Mean | Stdev |
8_H3-25_N1-8 | 1.956 | 0.123 |
| Mean | Stdev |
8_O4-25_H61-8 | 2.097 | 0.300 |
| Mean | Stdev |
9_H61-24_O4-9 | 2.019 | 0.208 |
| Mean | Stdev |
9_N1-24_H3-9 | 1.975 | 0.126 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | H41-O6_1-32 | 2.9363 | 2.2451 |
1 | N3-H1_1-32 | 2.8530 | 2.1391 |
1 | O2-H21_1-32 | 2.7970 | 2.2039 |
2 | O6-H41_2-31 | 1.9544 | 0.1719 |
2 | H1-N3_2-31 | 1.9626 | 0.0967 |
2 | H21-O2_2-31 | 1.8901 | 0.1264 |
3 | O6-H41_3-30 | 1.9582 | 0.1566 |
3 | H1-N3_3-30 | 1.9759 | 0.0946 |
3 | H21-O2_3-30 | 1.9120 | 0.1311 |
4 | N1-H3_4-29 | 1.9794 | 0.1274 |
4 | H61-O4_4-29 | 1.9889 | 0.1834 |
5 | O6-H41_5-28 | 1.9776 | 0.1645 |
5 | H1-N3_5-28 | 1.9623 | 0.0920 |
5 | H21-O2_5-28 | 1.9149 | 0.1345 |
6 | N1-H3_6-27 | 1.9845 | 0.1232 |
6 | H61-O4_6-27 | 1.9760 | 0.1733 |
7 | H41-O6_7-26 | 2.0218 | 0.1851 |
7 | N3-H1_7-26 | 1.9747 | 0.0988 |
7 | O2-H21_7-26 | 1.8954 | 0.1262 |
8 | H3-N1_8-25 | 1.9564 | 0.1228 |
8 | O4-H61_8-25 | 2.0970 | 0.2999 |
9 | N1-H3_9-24 | 1.9754 | 0.1255 |
9 | H61-O4_9-24 | 2.0187 | 0.2081 |
10 | O6-H41_10-23 | 1.9936 | 0.1739 |
10 | H1-N3_10-23 | 1.9638 | 0.0923 |
10 | H21-O2_10-23 | 1.8928 | 0.1245 |
11 | O6-H41_11-22 | 1.9550 | 0.1567 |
11 | H1-N3_11-22 | 1.9602 | 0.0914 |
11 | H21-O2_11-22 | 1.9107 | 0.1321 |
12 | H41-O6_12-21 | 1.9753 | 0.1651 |
12 | N3-H1_12-21 | 1.9591 | 0.0923 |
12 | O2-H21_12-21 | 1.8999 | 0.1245 |
13 | H3-N1_13-20 | 1.9831 | 0.1247 |
13 | O4-H61_13-20 | 1.9768 | 0.1724 |
14 | H41-O6_14-19 | 1.9599 | 0.1582 |
14 | N3-H1_14-19 | 1.9613 | 0.0900 |
14 | O2-H21_14-19 | 1.8817 | 0.1196 |
15 | O6-H41_15-18 | 1.9441 | 0.1462 |
15 | H1-N3_15-18 | 1.9736 | 0.0913 |
15 | H21-O2_15-18 | 1.9072 | 0.1265 |
16 | H41-O6_16-17 | 1.9833 | 0.2228 |
16 | N3-H1_16-17 | 2.0021 | 0.1433 |
16 | O2-H21_16-17 | 1.9190 | 0.1684 |