Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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A |
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T |
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T |
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G |
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G |
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G |
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G |
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A |
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C |
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A |
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C |
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T |
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A |
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C |
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G |
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C |
3' |
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3' |
C |
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G |
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T |
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A |
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A |
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C |
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C |
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C |
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C |
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T |
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G |
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T |
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G |
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A |
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T |
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G |
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C |
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5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.024 | 0.281 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.941 | 0.275 |
| Mean | Stdev |
1_O6-36_H41-1 | 2.039 | 0.547 |
| Mean | Stdev |
10_H61-27_O4-10 | 1.955 | 0.167 |
| Mean | Stdev |
10_N1-27_H3-10 | 2.005 | 0.135 |
| Mean | Stdev |
11_H41-26_O6-11 | 1.993 | 0.195 |
| Mean | Stdev |
11_N3-26_H1-11 | 1.987 | 0.109 |
| Mean | Stdev |
11_O2-26_H21-11 | 1.883 | 0.115 |
| Mean | Stdev |
12_H61-25_O4-12 | 1.985 | 0.183 |
| Mean | Stdev |
12_N1-25_H3-12 | 1.963 | 0.113 |
| Mean | Stdev |
13_H41-24_O6-13 | 2.022 | 0.185 |
| Mean | Stdev |
13_N3-24_H1-13 | 1.981 | 0.100 |
| Mean | Stdev |
13_O2-24_H21-13 | 1.908 | 0.135 |
| Mean | Stdev |
14_H3-23_N1-14 | 1.952 | 0.113 |
| Mean | Stdev |
14_O4-23_H61-14 | 2.091 | 0.273 |
| Mean | Stdev |
15_H61-22_O4-15 | 1.968 | 0.182 |
| Mean | Stdev |
15_N1-22_H3-15 | 2.007 | 0.138 |
| Mean | Stdev |
16_H41-21_O6-16 | 1.978 | 0.162 |
| Mean | Stdev |
16_N3-21_H1-16 | 1.981 | 0.099 |
| Mean | Stdev |
16_O2-21_H21-16 | 1.887 | 0.120 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.961 | 0.089 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.886 | 0.120 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.957 | 0.150 |
| Mean | Stdev |
18_H41-19_O6-18 | 2.014 | 0.522 |
| Mean | Stdev |
18_N3-19_H1-18 | 2.029 | 0.493 |
| Mean | Stdev |
18_O2-19_H21-18 | 1.950 | 0.575 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.963 | 0.157 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.970 | 0.095 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.885 | 0.119 |
| Mean | Stdev |
3_H61-34_O4-3 | 1.998 | 0.183 |
| Mean | Stdev |
3_N1-34_H3-3 | 1.982 | 0.119 |
| Mean | Stdev |
4_H3-33_N1-4 | 1.992 | 0.125 |
| Mean | Stdev |
4_O4-33_H61-4 | 2.001 | 0.178 |
| Mean | Stdev |
5_H3-32_N1-5 | 1.962 | 0.113 |
| Mean | Stdev |
5_O4-32_H61-5 | 2.000 | 0.182 |
| Mean | Stdev |
6_H1-31_N3-6 | 1.971 | 0.093 |
| Mean | Stdev |
6_H21-31_O2-6 | 1.884 | 0.117 |
| Mean | Stdev |
6_O6-31_H41-6 | 1.971 | 0.156 |
| Mean | Stdev |
7_H1-30_N3-7 | 1.965 | 0.091 |
| Mean | Stdev |
7_H21-30_O2-7 | 1.903 | 0.129 |
| Mean | Stdev |
7_O6-30_H41-7 | 1.950 | 0.149 |
| Mean | Stdev |
8_H1-29_N3-8 | 1.963 | 0.097 |
| Mean | Stdev |
8_H21-29_O2-8 | 1.903 | 0.133 |
| Mean | Stdev |
8_O6-29_H41-8 | 1.953 | 0.175 |
| Mean | Stdev |
9_H1-28_N3-9 | 1.971 | 0.105 |
| Mean | Stdev |
9_H21-28_O2-9 | 1.909 | 0.131 |
| Mean | Stdev |
9_O6-28_H41-9 | 1.958 | 0.174 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 2.0391 | 0.5468 |
1 | H1-N3_1-36 | 2.0244 | 0.2808 |
1 | H21-O2_1-36 | 1.9407 | 0.2754 |
2 | H41-O6_2-35 | 1.9627 | 0.1568 |
2 | N3-H1_2-35 | 1.9699 | 0.0954 |
2 | O2-H21_2-35 | 1.8847 | 0.1188 |
3 | N1-H3_3-34 | 1.9818 | 0.1189 |
3 | H61-O4_3-34 | 1.9983 | 0.1829 |
4 | H3-N1_4-33 | 1.9918 | 0.1252 |
4 | O4-H61_4-33 | 2.0012 | 0.1779 |
5 | H3-N1_5-32 | 1.9617 | 0.1129 |
5 | O4-H61_5-32 | 1.9998 | 0.1824 |
6 | O6-H41_6-31 | 1.9714 | 0.1558 |
6 | H1-N3_6-31 | 1.9707 | 0.0931 |
6 | H21-O2_6-31 | 1.8839 | 0.1173 |
7 | O6-H41_7-30 | 1.9497 | 0.1491 |
7 | H1-N3_7-30 | 1.9653 | 0.0915 |
7 | H21-O2_7-30 | 1.9032 | 0.1288 |
8 | O6-H41_8-29 | 1.9527 | 0.1748 |
8 | H1-N3_8-29 | 1.9628 | 0.0969 |
8 | H21-O2_8-29 | 1.9031 | 0.1326 |
9 | O6-H41_9-28 | 1.9582 | 0.1740 |
9 | H1-N3_9-28 | 1.9710 | 0.1054 |
9 | H21-O2_9-28 | 1.9088 | 0.1308 |
10 | N1-H3_10-27 | 2.0049 | 0.1353 |
10 | H61-O4_10-27 | 1.9554 | 0.1671 |
11 | H41-O6_11-26 | 1.9926 | 0.1949 |
11 | N3-H1_11-26 | 1.9873 | 0.1091 |
11 | O2-H21_11-26 | 1.8825 | 0.1152 |
12 | N1-H3_12-25 | 1.9630 | 0.1132 |
12 | H61-O4_12-25 | 1.9854 | 0.1833 |
13 | H41-O6_13-24 | 2.0220 | 0.1848 |
13 | N3-H1_13-24 | 1.9809 | 0.1003 |
13 | O2-H21_13-24 | 1.9082 | 0.1353 |
14 | H3-N1_14-23 | 1.9517 | 0.1129 |
14 | O4-H61_14-23 | 2.0915 | 0.2729 |
15 | N1-H3_15-22 | 2.0073 | 0.1378 |
15 | H61-O4_15-22 | 1.9680 | 0.1824 |
16 | H41-O6_16-21 | 1.9782 | 0.1623 |
16 | N3-H1_16-21 | 1.9813 | 0.0985 |
16 | O2-H21_16-21 | 1.8874 | 0.1202 |
17 | O6-H41_17-20 | 1.9573 | 0.1502 |
17 | H1-N3_17-20 | 1.9610 | 0.0894 |
17 | H21-O2_17-20 | 1.8862 | 0.1204 |
18 | H41-O6_18-19 | 2.0144 | 0.5224 |
18 | N3-H1_18-19 | 2.0290 | 0.4933 |
18 | O2-H21_18-19 | 1.9496 | 0.5745 |