Sequence | GCTATATATATATATAGC |
Rev. Sequence | GCTATATATATATATAGC |
Type | DNA |
SubType | B |
Chains | duplex |
Pdb | - |
Ligands | No |
AdditionalIons | No |
AdditionalMolecules | No |
AdditionalSolvent | No |
Author | P.D. |
Chains | duplex |
Comments | muABC |
CounterIons | K+Cl- |
Format | mdcrd |
FrameStep | 1 ps |
Frames | 1000000 |
IonicConcentration | 0.15M |
IonsParameters | Dang |
Ligands | No |
NucType | DNA |
PDB | No |
Parts | DNA+ions |
RMSd_avg | 2.934 |
RMSd_stdev | 0.745 |
Rgyr_avg | 17.999 |
Rgyr_stdev | 0.477 |
SASA_avg | 6573.217 |
SASA_stdev | 100.164 |
SubType | B |
Temperature | 298K |
Topology | TCGA_nowat.prmtop |
Trajectory | TCGA_last250ns.trj |
Water | SPCE |
_id | NAFlex_muTATA |
boxAngle | 109.471219 |
boxX | 80.6967449 |
boxY | 80.6967449 |
boxZ | 80.6967449 |
dataset | Array |
date | 0.00000000 1462320000 |
description | DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt |
forceField | parmBSC1 |
ionsModel | - |
moleculeType | Dna |
rev_sequence | GCTATATATATATATAGC |
saltConcentration | - |
sequence | GCTATATATATATATAGC |
soluteAtoms | 1146 |
soluteCharge | -34 |
soluteResidues | 36 |
solventAtoms | - |
solventResidues | - |
time | 1,000 |
totalAtoms | 1146 |
totalCharge | -34 |
totalIons | - |
totalResidues | 36 |