Sequence | GCGATCGATCGATCGAGC |
Rev. Sequence | GCTCGATCGATCGATCGC |
Type | DNA |
SubType | B |
Chains | duplex |
Pdb | - |
Ligands | No |
AdditionalIons | No |
AdditionalMolecules | No |
AdditionalSolvent | No |
Author | P.D. |
Chains | duplex |
Comments | muABC |
CounterIons | K+Cl- |
Format | mdcrd |
FrameStep | 1 ps |
Frames | 1000000 |
IonicConcentration | 0.15M |
IonsParameters | Dang |
Ligands | No |
NucType | DNA |
PDB | No |
Parts | DNA+ions |
RMSd_avg | 2.110 |
RMSd_stdev | 0.460 |
Rgyr_avg | 18.351 |
Rgyr_stdev | 0.346 |
SASA_avg | 6398.593 |
SASA_stdev | 97.057 |
SubType | B |
Temperature | 298K |
Topology | TCGA_nowat.prmtop |
Trajectory | TCGA_last250ns.trj |
Water | SPCE |
_id | NAFlex_muTCGA |
dataset | Array |
date | 0.00000000 1429488000 |
description | DNA-B Duplex Naked ParmBSC1 SPC/E AddedSalt |
forceField | parmBSC1 |
ionsModel | - |
moleculeType | Dna |
rev_sequence | GCTCGATCGATCGATCGC |
saltConcentration | - |
sequence | GCGATCGATCGATCGAGC |
soluteAtoms | 1139 |
soluteCharge | -34 |
soluteResidues | 36 |
solventAtoms | - |
solventResidues | - |
time | 1,000 |
totalAtoms | 1139 |
totalCharge | -34 |
totalIons | - |
totalResidues | 36 |