Online tool for sequence alignment

Web aplication that perform multiple sequence alignment of protein sequences using Clustal-Omega. Clustal Omega is a multiple sequence alignment program that uses seeded guide trees and HMM profile-profile techniques to generate alignments between three or more sequences.

UniProt ID input

UniProt ID is an unique protein identifier in the Uiprot database ( UniProt database ). You can enter two or more UniProt protein IDs to perform the alignment.

Sequence Input

Two or more sequences to be aligned can be entered directly into this box. Sequences can only be in FASTA format. Partially formatted sequences are not accepted.

File Upload

A file containing two or more valid sequences in FASTA format can be uploaded and used as input for the multiple sequence alignment.

Output

Downloadable file that contains the multiple sequence alignment in different formats (ClustalW, Fasta, Msf, Phylip, Selex, Stockholm, Vienna).