Nucleosome Dynamics Help - Input data

Input data Help

• MNase-seq data is the primary input for Nucleosome Dynamics portal. User needs to upload it to the server in BAM format, a binary format containing the reads already aligned against the reference genome.
• Genome Alignment can be performed using Bowtie, BWA or GEM3. MuG VRE implementation contains tools to perform alignment before running Nucleosome Dynamics.
• We recommend at least a 20x genome coverage to get significant results.

• Click here to view the reference genomes currently implemented in the server.

  Homo Sapiens	Hg19 / GRCh37 Hg38 / GRCh38
  Mus Musculus	GRCm38 / mm10 NCBI37 / mm9
  Xenopus tropicalis	V9.1 / xenTro9
  Zebrafish	GRCz11 / danRer11
  Drosophila Melanogaster	BDGP r6 + ISO1 MT / dm6 R5.01 / dm3
  Saccharomyces cerevisiae	R64-1-1 / sacCer3 sacCer1
  Schizosaccharomyces pombe	ASM294v2