MDWeb is a personal workspace providing standard protocols to prepare structures, run standard molecular dynamics simulations and to analyze trajectories.

MDWeb is based on well known simulation programs like Amber, NAMD and Gromacs, and a series of preparation and analysis tools, joined together in a common interface.

MDWeb does not provide free access to licensed software, all operations are based on open-access modules and tools.

MDWeb internal engine is powered by MDMoby a network of web-services based on the BioMoby protocol, that are also accessible programatically using standard web-service clients and APIs.