Biblio

Transferability of fragmental contributions to the octanol/water partition coefficient: an NDDO-based MST study., Curutchet, C, Salichs A, Barril X, Orozco Modesto, and F Luque Javier , J Comput Chem, 2003 Jan 15, Volume 24, p.32-45, (2003)

Triplex formation using oligonucleotide clamps carrying 8-aminopurines., Aviñó, Anna, Grimau Marta G., Alvira Margarita, Eritja Ramon, Gargallo Raimundo, Orozco Modesto, and González Carlos , Nucleosides Nucleotides Nucleic Acids, 2007, Volume 26, p.979-83, (2007)

Triplex-forming oligonucleotide target sequences in the human genome., J Goñi, Ramon, de la Cruz Xavier, and Orozco Modesto , Nucleic Acids Res, 2004, Volume 32, p.354-60, (2004)

Unconventional interactions between water and heterocyclic nitrogens in protein structures., Stollar, Elliott J., Gelpí Josep-Lluis, Velankar Sameer, Golovin Adel, Orozco Modesto, and Luisi Ben F. , Proteins, 2004 Oct 1, Volume 57, p.1-8, (2004)

Understanding the Connection between Epigenetic DNA Methylation and Nucleosome Positioning from Computer Simulations, Portella, Guillem, Battistini Federica, and Orozco Modesto , PLoS Comput Biol, 11, Volume 9, p.e1003354, (2013)

Unique tautomeric and recognition properties of thioketothymines?, Faustino, Ignacio, Aviñó Anna, Marchán Ivan, F Luque Javier, Eritja Ramon, and Orozco Modesto , J Am Chem Soc, 2009 Sep 9, Volume 131, p.12845-53, (2009)

Unique tautomeric properties of isoguanine., Blas, José Ramón, F Luque Javier, and Orozco Modesto , J Am Chem Soc, 2004 Jan 14, Volume 126, p.154-64, (2004)

Unraveling the sequence-dependent polymorphic behavior of d(CpG) steps in B-DNA, Dans, Pablo D., Faustino Ignacio, Battistini Federica, Zakrzewska Krystyna, Lavery Richard, and Orozco Modesto , Nucleic Acid Research, 09/2014, (2014)

Unravelling the hidden DNA structural/physical code provides novel insights on promoter location., Durán, Elisa, Djebali Sarah, González Santi, Flores Oscar, Mercader Josep Maria, Guigó Roderic, Torrents David, Soler-López Montserrat, and Orozco Modesto , Nucleic Acids Res, 2013 Aug, Volume 41, p.7220-30, (2013)

Use of bioinformatics tools for the annotation of disease-associated mutations in animal models., Ferrer-Costa, Carles, Orozco Modesto, and de la Cruz Xavier , Proteins, 2005 Dec 1, Volume 61, p.878-87, (2005)

The use of conformationally rigid nucleoside probes to study the role of sugar pucker and nucleobase orientation in the thrombin binding aptamer., Saneyoshi, Hisao, Mazzini Stefania, Aviñó Anna, Portella Guillem, González Carlos, Orozco Modesto, Marquez Victor E., and Eritja Ramon , Nucleic Acids Symp Ser (Oxf), 2009, p.109-10, (2009)

On the Use of low-resolution Data to Improve Structure Prediction of Proteins and Protein Complexes, D’Abramo, Marco, Meyer Tim, Bernadó Pau, Pons Carles, Recio Juan Fernánde, and Orozco Modesto , Journal of Chemical Theory and Computation, 2009/11/10, Volume 5, Issue 11, p.3129 - 3137, (2009)

VeriNA3d: an R package for nucleic acids data mining, Gallego, Diego, Darré Leonardo, Dans Pablo D., and Orozco Modesto , Bioinformatics, 07/2019, (2019)

Visualizing phosphodiester-bond hydrolysis by an endonuclease., Molina, Rafael, Stella Stefano, Redondo Pilar, Gómez Hansel, Marcaida María José, Orozco Modesto, Prieto Jesús, and Montoya Guillermo , Nat Struct Mol Biol, 2015 Jan, Volume 22, p.65-72, (2015)

Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia., Puente, Xose S., Pinyol Magda, Quesada Víctor, Conde Laura, Ordóñez Gonzalo R., Villamor Neus, Escaramis Georgia, Jares Pedro, Beà Sílvia, González-Díaz Marcos, et al. , Nature, 2011 Jul 7, Volume 475, p.101-5, (2011)

Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia., Puente, Xose S., Pinyol Magda, Quesada Víctor, Conde Laura, Ordóñez Gonzalo R., Villamor Neus, Escaramis Georgia, Jares Pedro, Beà Sílvia, González-Díaz Marcos, et al. , Nature, 2011 Jul 7, Volume 475, p.101-5, (2011)

X-Pol Potential: An Electronic Structure-Based Force Field for Molecular Dynamics Simulation of a Solvated Protein in Water., Xie, Wangshen, Orozco Modesto, Truhlar Donald G., and Gao Jiali , J Chem Theory Comput, 2009 Feb 17, Volume 5, p.459-467, (2009)

The Yottaflop Frontier of Atomistic Molecular Dynamics Simulations, J Goñi, Ramon, and Orozco Modesto , Theoretical and Quantum Chemistry at the Dawn of the 21st Century, p.597-616, (2018)

μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA., Pasi, Marco, Maddocks John H., Beveridge David, Bishop Thomas C., Case David A., Cheatham Thomas, Dans Pablo D., Jayaram B, Lankaš Filip, Laughton Charles, et al. , Nucleic Acids Res, 2014 Oct 29, Volume 42, p.12272-83, (2014)

μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA., Pasi, Marco, Maddocks John H., Beveridge David, Bishop Thomas C., Case David A., Cheatham Thomas, Dans Pablo D., Jayaram B, Lankaš Filip, Laughton Charles, et al. , Nucleic Acids Res, 2014 Oct 29, Volume 42, p.12272-83, (2014)